View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7799_low_8 (Length: 488)
Name: NF7799_low_8
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 26357565 - 26357948
Alignment:
| Q |
14 |
cagagagcaacagttatgcatagcgagtgatatagtacaattaagttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaacta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357565 |
cagagagcaacagttatgcatagcgagtgatatagtacaattaagttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaacta |
26357664 |
T |
|
| Q |
114 |
agaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagtt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26357665 |
agaactgatgcaatacctaaagattcaacaagctattactaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagtt |
26357764 |
T |
|
| Q |
214 |
ggttgtac----------aacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgcc |
303 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357765 |
ggttgtacaacactgataaacactgatatcaaacatgtaagctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgcc |
26357864 |
T |
|
| Q |
304 |
agaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357865 |
agaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagagataaagatcaagcagcaaaataggttct |
26357948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 60 - 387
Target Start/End: Original strand, 51759446 - 51759766
Alignment:
| Q |
60 |
tgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaacact |
159 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |||||| |
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|
| T |
51759446 |
tgagctgggaacataaattaagcaacaattatacataaccaagagtaag-------aactgatgcagtatctaaagattcaacaagctattactaacact |
51759538 |
T |
|
| Q |
160 |
ccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaa |
259 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||| |
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|
| T |
51759539 |
ctaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatctaaa |
51759638 |
T |
|
| Q |
260 |
tcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagag |
359 |
Q |
| |
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| ||| ||||| ||||| |||||||||||||| ||||||| |||||||||||||| | |||||||||| ||||||||||| | || ||| || ||||| |
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|
| T |
51759639 |
taactatgttgaatggattgagaagacaattttgaatatataccagaaacaactccgaagttaatccatacttcacaatgtcacgatgaagcttttagag |
51759738 |
T |
|
| Q |
360 |
ataaagatcaagcagcaaaataggttct |
387 |
Q |
| |
|
|| || |||||||||||||||||||||| |
|
|
| T |
51759739 |
atcaaaatcaagcagcaaaataggttct |
51759766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 8e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 57 - 387
Target Start/End: Original strand, 6684843 - 6685166
Alignment:
| Q |
57 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
156 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||| |
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|
| T |
6684843 |
agttgagctgggaacataaattatgcaacaattatacataaccaagagtaag-------aactgatgcagtacctaaagattcaacaagctatacctaac |
6684935 |
T |
|
| Q |
157 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatcc |
256 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |
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|
| T |
6684936 |
actctaaatcaaaagggcagcatccaactgttatactaatattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatcc |
6685035 |
T |
|
| Q |
257 |
aaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattcta |
356 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||| ||||| ||| | || |
|
|
| T |
6685036 |
aaataactatgttgaatggactgagaagacaattttgaatatatgccaaaaacaactcccaagttaatccatacttcacaatgtcatcatgaagctctta |
6685135 |
T |
|
| Q |
357 |
gagataaagatcaagcagcaaaataggttct |
387 |
Q |
| |
|
||||| || ||||| ||||||||| |||||| |
|
|
| T |
6685136 |
gagatcaaaatcaaccagcaaaattggttct |
6685166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 67 - 315
Target Start/End: Original strand, 30821828 - 30822069
Alignment:
| Q |
67 |
ggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatc |
166 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
30821828 |
ggaacagaaattaagcaacaattataaataaccaagagtaag-------aactgattcagtacctaaatattcaacaagctattactaacactcttaatc |
30821920 |
T |
|
| Q |
167 |
aaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaatcactgt |
266 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||| | |
|
|
| T |
30821921 |
aaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatccaaataactat |
30822020 |
T |
|
| Q |
267 |
gttggatggactgagaagacaatttcaaatatatgccagaaacaactcc |
315 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
30822021 |
gttgaatggattgagaagacaattttgaatatatgccagaaaaaactcc |
30822069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 57 - 304
Target Start/End: Original strand, 30812556 - 30812796
Alignment:
| Q |
57 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
156 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
30812556 |
agttgagctgggaacataaattaagcaacaattataaataaccaagagtaag-------aactgattcagtacctaaagattcaacaagctattactaac |
30812648 |
T |
|
| Q |
157 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatcc |
256 |
Q |
| |
|
|||| |||||| |||| | ||||||| |||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||||| ||||||||||||| |
|
|
| T |
30812649 |
actcttaatcaacagggcaacatccaactgttatactaacatttcaaatcaaaaattggttgtacaaaactaatatcatacatgtaagctagtaatatcc |
30812748 |
T |
|
| Q |
257 |
aaatcactgtgttggatggactgagaagacaatttcaaatatatgcca |
304 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
30812749 |
aaataactatgttgaatggactgagaagacaattttgaataaatgcca |
30812796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 12592521 - 12592727
Alignment:
| Q |
57 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
156 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| | |||| | ||||||||||||||| |||||||||| ||| |
|
|
| T |
12592521 |
agttgagctgggaacagaaattaagcaataattatacataaccaagagaaagaatt-------gatgtagtacctaaagattcaataagctattactaac |
12592613 |
T |
|
| Q |
157 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatcc |
256 |
Q |
| |
|
| | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||| ||||||||||||| |
|
|
| T |
12592614 |
aaactaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgataacatacatgtaagctagtaatatcc |
12592713 |
T |
|
| Q |
257 |
aaatcactgtgttg |
270 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
12592714 |
aaataactatgttg |
12592727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 57 - 336
Target Start/End: Original strand, 27810568 - 27810826
Alignment:
| Q |
57 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
156 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
27810568 |
agttgagatgggaacagaaattaagcaacaattataaataaccaagagtaagaact-------gatgcagtacctaaagattcaacaagctattactaac |
27810660 |
T |
|
| Q |
157 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgcta--gtaatat |
254 |
Q |
| |
|
|||| |||||||||||| || |||||| |||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||| |
|
|
| T |
27810661 |
actctaaatcaaaagggcag----------------taacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctatagtaatat |
27810744 |
T |
|
| Q |
255 |
ccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcaca |
336 |
Q |
| |
|
|||||| ||| ||||| |||||||||||| ||||||| |||||| |||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
27810745 |
ccaaataactatgttgaatggactgagaatacaattttgaatataagccagaaaaaactcccaagttaatccatacttcaca |
27810826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 2942576 - 2942525
Alignment:
| Q |
57 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaag |
108 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2942576 |
agttgagctgggaacagaaattaagcaacaatcatacataaccaagagtaag |
2942525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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