View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7799_low_9 (Length: 437)
Name: NF7799_low_9
Description: NF7799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7799_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 22 - 420
Target Start/End: Complemental strand, 11034457 - 11034064
Alignment:
| Q |
22 |
ataaccaggctcactgtaattatggttggtatatatgcaattctgcgctttagatactctattttttcaagttggttgcttaattttcttttatttacaa |
121 |
Q |
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| T |
11034457 |
ataaccaggctcactgtaattatggttggtatatatgcaattctgctctttagatactctattttttcaagttggttgcttaattttcttttatttacaa |
11034358 |
T |
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| Q |
122 |
ttacatcgatcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgtatgtccttgcagcttactggaata |
221 |
Q |
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| T |
11034357 |
ttacatcgatcttccacacccatttgttagagtgagtgctactaattaacactcaatctgttactatgctttgtgtatgtccttgcagcttactggaata |
11034258 |
T |
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| Q |
222 |
atgtggcttggatagttgcacgtttatcgagtcgcataggtaagcaagacataagacttaaaataaagtttagaaaacaaattttcagtacaaaaactat |
321 |
Q |
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| T |
11034257 |
atgtggcttggatagttgcatgtttatcgagtcgcacaggtaagcaagacataagacttaaaataaagtttagaaaacaaattttcagtacaaaaactat |
11034158 |
T |
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| Q |
322 |
nnnnnnnnncttgttctgttgttagtatgatgtcttttcttctaaaaaacttgtcaatagtaagtaatattgggcaatatttttcgcatgagttatttg |
420 |
Q |
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| T |
11034157 |
-aaaaaaaacttgttctgttgttagtatgatgtcttttcttctaaaaaacttgtaaat----agtaatattgggcaatatttttcgcatgagttatttg |
11034064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 11009068 - 11008834
Alignment:
| Q |
19 |
aatataaccaggctcactgtaattatggttggtatatat--gcaattctgcgctttagatactctatttttt-caagttggttgcttaatttt-ctttta |
114 |
Q |
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||||||||||| |||||||||| |||||||||||||||| ||| || |||| |||| |||||||||||||| ||| || | ||||||||||| || ||| |
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| T |
11009068 |
aatataaccagcctcactgtaaatatggttggtatatatatgcagttgtgcgatttatatactctatttttttcaatttcgatgcttaatttttctatta |
11008969 |
T |
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| Q |
115 |
tttacaattacatcgatcttccacacccatttgttagagtgagtgctactaattaacacttaatctgttactatgctttgtgtatgtccttgcagcttac |
214 |
Q |
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|||||||| | | ||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| |||||||||| ||| || ||||||| |||| |
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| T |
11008968 |
tttacaatcgcgtggatcttccacatccatttgttagagtgagtgctactaaataacactcaatatgtcactatgctttatgtttgctcttgcagattac |
11008869 |
T |
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| Q |
215 |
tggaataatgtggcttggatagttgcacgtttatc |
249 |
Q |
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| T |
11008868 |
tggaataacgcggcttggatagttgcacgtttatc |
11008834 |
T |
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