View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_high_13 (Length: 364)
Name: NF7800_high_13
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 51373837 - 51373502
Alignment:
| Q |
18 |
attccaacaaagatatgcctaatgaagaggttgaaatggatttacttgggatacaacaatctttcaggagagataccaaagaacattggaaacttagttt |
117 |
Q |
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| T |
51373837 |
attccaacaaagatatgcctaatgaagaggttgaaatggatttacttgggatacaacaatctttcaggagagataccaaagaacattggaaacttagttt |
51373738 |
T |
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| Q |
118 |
cattgaatcaccttaatcttgtttacaacaatctcacaggaccaattcctgaatcacttggaaacctcacaaatcttcaatatctctttctctacctaaa |
217 |
Q |
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| T |
51373737 |
cattgaatcaccttaatcttgtttacaacaatctcacaggaccaattcctgaatcacttggaaacctcacaaatcttcaatatctctttctctacctaaa |
51373638 |
T |
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| Q |
218 |
caaactcaccggcccaattcccaaatccattttcaatttgaaaaacctcatttcacttgatctcagtgataattatctttcaggagagatttcaaacctt |
317 |
Q |
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| T |
51373637 |
caaactcaccggcccaattcccaaatccattttcaatttgaaaaacctcatttcacttgatctcagtgataattatctttcaggagagatttcaaacctt |
51373538 |
T |
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| Q |
318 |
gttgtcaaccttcaaaaactagagattcttcatctc |
353 |
Q |
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| T |
51373537 |
gttgtcaaccttcaaaaactagagattcttcatctc |
51373502 |
T |
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