View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_high_2 (Length: 613)
Name: NF7800_high_2
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 49070224 - 49070817
Alignment:
| Q |
1 |
gaatgtaaggcacgtagcaaacaaaggtataaccgtataaaatacatccgatcagataccaataatggtgtacaataatttgatgcaggttttggacagt |
100 |
Q |
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| T |
49070224 |
gaatgtaaggcacgtagcaaacaaaggtataaccgtataaaatacatccgatcagataccaataatggtgtacaataatttgatgcaggttttggacagt |
49070323 |
T |
|
| Q |
101 |
catttttgtcacaaacaagactttgaaactgtttcatgttcttagccagacaatattcatatgaactcttaatataacacaatacnnnnnnnnn-ctgtc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||| |
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| T |
49070324 |
catttttgtcacaaacaagactttgaaactgtttcatgttcttagccagacaatattcatgcgaactcttaatataacacactacttttttttttccgtc |
49070423 |
T |
|
| Q |
200 |
tttttgaacccttcacttatcaattcatagcatcaattgcataaatgttggctacagctccaactaccttgaactaaagtagtggtaagtggtatcaatt |
299 |
Q |
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| T |
49070424 |
tttttgaacccttcacttatcaattcatagcatcaattgcataaatgttggctacagctccaactaccttgaactaaagtagtggtaagtggtatcaatt |
49070523 |
T |
|
| Q |
300 |
gaaaacaacacctcattgtacaaatcaaacccattaaccaaaatgtccgaaagcattgggttgatttatatgatgaatgaattaatctctcctgattgta |
399 |
Q |
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| T |
49070524 |
gaaaacaacacctcattgtacaaatcaaacccattaaccaaaatgtccgaaagcattggattgatttatatgatgaatgaattaatctctcctgattgta |
49070623 |
T |
|
| Q |
400 |
ataaataacttgagatctaattttctgattaaaagggtatttcaattttcaacttccatcaannnnnnnnnnnnnattcctttcacaaaaaatgaacttt |
499 |
Q |
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| T |
49070624 |
ataaataacttgagatctaattttctgattaaaagggtatttcaattttcaacttccatcaa--atatatatataattcctttcacaaaaaatgaacttt |
49070721 |
T |
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| Q |
500 |
ttacagaagccataagagaattcaacatatataggaaaataattcaaaaattaaaaagactaaccaattggcaaagaattcaacaacagcgaaggt |
595 |
Q |
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| T |
49070722 |
ttacagaacccataagagaattcaacatatataggaaaataattcaaaaattaaaaagactaaccaattggcaaagaattcaacaacagcgaaggt |
49070817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 49047703 - 49047740
Alignment:
| Q |
70 |
gtacaataatttgatgcaggttttggacagtcattttt |
107 |
Q |
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| T |
49047703 |
gtacaataatttgatgcaggttttggacattcattttt |
49047740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 49047900 - 49047941
Alignment:
| Q |
199 |
ctttttgaacccttcacttatcaattcatagcatcaattgca |
240 |
Q |
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| T |
49047900 |
ctttttgaacccttcactactcaattcattgcatcaattgca |
49047941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 9758473 - 9758436
Alignment:
| Q |
70 |
gtacaataatttgatgcaggttttggacagtcattttt |
107 |
Q |
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| T |
9758473 |
gtacaataatttgatgcaggttttggacattaattttt |
9758436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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