View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_high_20 (Length: 295)
Name: NF7800_high_20
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 43398742 - 43398479
Alignment:
| Q |
19 |
aaaatggcttctactgcaacaaccactctcttcatctcctcagaattcaaaccaaatctccccaattcccttcttttgccacgaattcgtatctgcaaca |
118 |
Q |
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| T |
43398742 |
aaaatggcttctactgcaacaaccactctcttcatctcctcagaattcaaaccaaatctccccaattcccttcttttgccacgaattcgtatctgcaaca |
43398643 |
T |
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| Q |
119 |
aacccttatcaatttcacttcaaccatcgaaattccgtgcaacccatttatcactatgcaattgttcccgcactccattaacaccctccacaattttctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43398642 |
aacccttatcaatttcacttcaaccatcgaaattccgtgcaacccatttatcactatgcaattgttcccgcactccattaacaccctccacaattttctc |
43398543 |
T |
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| Q |
219 |
tcctcaaacaactttaaccaacttcatttcacaaaaaatttcattttttctcattgggtcgttc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43398542 |
tcctcaaacaactttaaccaacttcatttcacaaaaaatttcattttttctcattgggtcgttc |
43398479 |
T |
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