View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_high_25 (Length: 271)
Name: NF7800_high_25
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 13879304 - 13879068
Alignment:
| Q |
16 |
ggatgaacagagaagtagttttttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgtt |
115 |
Q |
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| T |
13879304 |
ggatgaacagagaagtagtattttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgtt |
13879205 |
T |
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| Q |
116 |
ctgttctgtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataat |
215 |
Q |
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| T |
13879204 |
ctgttctgtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataat |
13879105 |
T |
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| Q |
216 |
tatatagctagttgatgcaacttaatctgccttctat |
252 |
Q |
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| T |
13879104 |
tatatagctagttgatgcaacttaatctgccttctat |
13879068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
154 |
taccaattgctatcaatcaatattataaatatatgatta |
192 |
Q |
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| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
31 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
112 |
Q |
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| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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