View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7800_high_27 (Length: 256)

Name: NF7800_high_27
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7800_high_27
NF7800_high_27
[»] chr3 (2 HSPs)
chr3 (16-215)||(7903556-7903755)
chr3 (16-85)||(41907350-41907418)
[»] chr7 (4 HSPs)
chr7 (166-216)||(10623444-10623494)
chr7 (165-205)||(16994588-16994628)
chr7 (20-146)||(24957327-24957452)
chr7 (168-216)||(24957660-24957708)
[»] chr4 (2 HSPs)
chr4 (168-216)||(18402790-18402838)
chr4 (16-92)||(10330211-10330288)
[»] chr6 (1 HSPs)
chr6 (166-216)||(3008748-3008798)
[»] chr8 (2 HSPs)
chr8 (13-78)||(21007053-21007117)
chr8 (17-78)||(33299379-33299440)
[»] chr5 (2 HSPs)
chr5 (52-146)||(19932127-19932221)
chr5 (16-85)||(35193498-35193566)
[»] chr1 (1 HSPs)
chr1 (165-203)||(48563366-48563404)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 7903755 - 7903556
Alignment:
Q  16 atattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacgacgatacaatgatataaatcagacctagaag 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  7903755 atattaaataaaaagaaagagatactaagattggaagatattagacctgacacagatacaacctaaacgacgatacaaggatataaatcagacctagaag 7903656  T
Q  116 atcagctctaatctattctaacaaaaattcaatcattacatgcgcaacttaggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7903655 atcagctctaatctattctaacaaaaattcaatcattacatgcgcaacttaggcagacaagacgacttgaaacttgcagatctcaacagatcgggaaaca 7903556  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 41907418 - 41907350
Alignment:
Q  16 atattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacga 85  Q
    |||||||||||||||||| |||||| ||||||||  ||||| ||||||||| |||| | |||| ||||||    
T  41907418 atattaaataaaaagaaa-agatacaaagattgggggacatcagacctgacccaggaataacccaaacga 41907350  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 10623494 - 10623444
Alignment:
Q  166 aggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 216  Q
    ||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  10623494 aggcagacaagacaacttgaaacctgcagatctcaacaaatctggaaacat 10623444  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 16994628 - 16994588
Alignment:
Q  165 taggcagacaagacgacttgaaacttgcagatctcaacaaa 205  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  16994628 taggcagacaagacgacttgaaatctgcagatctcaacaaa 16994588  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 24957327 - 24957452
Alignment:
Q  20 taaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacgacgatacaatgatataaatcagacctagaagatca 119  Q
    |||||||||||| |||||||| | || | |  |||||||||||| || |||||||||||||||    |||||||  ||||||| |||||||||  ||||     
T  24957327 taaataaaaagatagagatacaatgactcggggacattagacct-acccaggtacaacctaaatagggatacaacaatataaaccagacctagtggatcc 24957425  T
Q  120 gctctaatctattctaacaaaaattca 146  Q
     | |||||||||  |||||||||||||    
T  24957426 accctaatctatcttaacaaaaattca 24957452  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 24957660 - 24957708
Alignment:
Q  168 gcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 216  Q
    ||||||||||| |||||||||||||| ||||||||| ||  ||||||||    
T  24957660 gcagacaagactacttgaaacttgcaaatctcaacagatttggaaacat 24957708  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 18402790 - 18402838
Alignment:
Q  168 gcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 216  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  18402790 gcagacaagacgacttgaaatctgcagatctcaacaaatctggaaacat 18402838  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 10330288 - 10330211
Alignment:
Q  16 atattaaataaaaagaaagagatac-taagattggaagacattagacctgacacaggtacaacctaaacgacgataca 92  Q
    |||||||||||||| |||| ||||  |||  | ||| ||||||||||||||| |||||| ||||||||||| ||||||    
T  10330288 atattaaataaaaataaagggatagataaactaggatgacattagacctgacccaggtataacctaaacgaggataca 10330211  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 3008748 - 3008798
Alignment:
Q  166 aggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat 216  Q
    |||||||||| |||||||||||| | |||||||||||||||| ||||||||    
T  3008748 aggcagacaatacgacttgaaacctacagatctcaacaaatctggaaacat 3008798  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 21007053 - 21007117
Alignment:
Q  13 tcaatattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacc 78  Q
    ||||||||||||||||||||||||||||  ||||| |  | ||||||||||||| |||||||||||    
T  21007053 tcaatattaaataaaaagaaagagatacagagatttg-gggcattagacctgactcaggtacaacc 21007117  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 33299440 - 33299379
Alignment:
Q  17 tattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacc 78  Q
    ||||||||||||| ||||||||||  |||||||  ||||||||||||||| || ||||||||    
T  33299440 tattaaataaaaacaaagagatacagagattgggggacattagacctgacccatgtacaacc 33299379  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 19932127 - 19932221
Alignment:
Q  52 gacattagacctgacacaggtacaacctaaacgacgatacaatgatataaatcagacctagaagatcagctctaatctattctaacaaaaattca 146  Q
    ||||||| || |||| || |||||||| |||||   ||||||  |||||||||||||||||  ||||| | |||||||||  |||||||||||||    
T  19932127 gacattatacttgacccaagtacaacccaaacgggaatacaacaatataaatcagacctagtggatcaaccctaatctatcttaacaaaaattca 19932221  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 35193566 - 35193498
Alignment:
Q  16 atattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacga 85  Q
    |||||||||||||||||||||||||  ||| ||  || |||| |||||||| ||| ||||||||||||||    
T  35193566 atattaaataaaaagaaagagatacagagaatgagag-cattggacctgacccagttacaacctaaacga 35193498  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 48563404 - 48563366
Alignment:
Q  165 taggcagacaagacgacttgaaacttgcagatctcaaca 203  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  48563404 taggcatacaagacgacttgaaacctgcagatctcaaca 48563366  T

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