View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_high_30 (Length: 238)
Name: NF7800_high_30
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 36991205 - 36991406
Alignment:
| Q |
21 |
ggaggtgcatcaagtaatagtaataatgttatgaacattagtggaagtaagggtggtggagatgtaatgacactggatttgttggggataggaggaggag |
120 |
Q |
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| T |
36991205 |
ggaggtgcatcaagtaatagtaataatgttatgaacattagtggaagtaagggtggtggagatgtaatgacactggatttgttggggataggaggaggag |
36991304 |
T |
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| Q |
121 |
gtgcacatagtaatttctatggaggtggtggtacacaacaacaggcagaaagt---gcagcagcagcagctgatgaggtttggagaaattggtcaaccaa |
217 |
Q |
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| T |
36991305 |
gtgcacatagtaatttctatgga---ggtggtacacaacaacaggcagaaagtgcagcagcagcagcagctgatgaggtttggagaaattggtcaaccaa |
36991401 |
T |
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| Q |
218 |
gaatg |
222 |
Q |
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||||| |
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| T |
36991402 |
gaatg |
36991406 |
T |
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