View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7800_high_8 (Length: 422)
Name: NF7800_high_8
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 2601145 - 2601542
Alignment:
| Q |
7 |
gtagcagagattgaacctgggatattttgtatatgacaggaacacatgtacatattatatatcaacaattacacctgaaaaatata--ctaaacatacct |
104 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
2601145 |
gtagcagggattgaaccttggatattttacatataacaggaacatatgtacatattatatatcaacaattacacctgaaaaatatatactaaatatacct |
2601244 |
T |
|
| Q |
105 |
tctaatgatagaaattataattaaaaagtaactatatatatacataaatagaaaaagactgagaagatatagaaattaaagacagacatattttgttcga |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
2601245 |
tctaatgatagaaatttgaattaaaaagtaactatata----catatatagcaaaagactaagaagatatagaaattaaaggcaggcatattttgttcgc |
2601340 |
T |
|
| Q |
205 |
atcattttttctgatatcactaacactgattaatgagctttgttttagtggatagtaactaatcatcatatgtaccgggtgagcagatatatttgtcaac |
304 |
Q |
| |
|
| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
2601341 |
aacattttctctgatatcaataacactgattaatgagctttgttttagtggatagtaactaatcatcatttgtaccgggtgagcagatatatttgacagc |
2601440 |
T |
|
| Q |
305 |
ttgacgtgtaacaagagaaattttagtgaaaaatttggtgaggatgtgaagagtctcattgctatgtttgaagcctcccagctaagtattgagggagaag |
404 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2601441 |
ttgatgtttaacaagagaaattttagtgaaaaatttggtgaggatgtgaagagtctcattgctatgtatgaagcctcccagctaagtattgagggagaag |
2601540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 20617213 - 20617141
Alignment:
| Q |
334 |
aaaatttggtgaggatgtgaagagtctcattgctatgtttgaagcctcccagctaagtattgagggagaagat |
406 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||| |||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
20617213 |
aaaatatggtgaggatgtgaaaggtctcattgccttgtatgaagcatcccaactaagtattgaaggagaagat |
20617141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University