View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7800_low_1 (Length: 644)
Name: NF7800_low_1
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 117 - 626
Target Start/End: Original strand, 48174195 - 48174708
Alignment:
| Q |
117 |
gagtgaaggaaggttccctcaaaagaggttgaaggaacccgcaatgcaagagagggaagcagaggctataaaaatggaaggagaatgatcaagaagaaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48174195 |
gagtgaaggaaggttccctcaaaagaggttgaaggaacccgcaatgcaagagagggaagcagaggctataaaaatggaaggagaatgatcaagaagaaaa |
48174294 |
T |
|
| Q |
217 |
ggtgaaaggaagaggaagccatgcatgcaatgatgatgggaatgcnnnnnnnn-tgttgaggttgtatcggagagaaaagggggagaatttgaatggaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48174295 |
ggtgaaaggaagaggaagccatgcatgcaatgatgatgggaatgcaaaaaaaaatgttgaggttgtatcggagagaaaagggggagaatttgaatggaca |
48174394 |
T |
|
| Q |
316 |
ttattttgaggtacgtgcatgtccttttacatgcatagattccgatatttgtggatttcaggcatatatgttgttgtttttgtatgtttttatcagtatt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48174395 |
ttattttgaggtacgtgcatgtccttttacatgcatagattccgatatttgtggatttcaggcatatatgttgttgtttttgtatg-ttttatcagtatt |
48174493 |
T |
|
| Q |
416 |
tgtgttccattctaggatggatccaacgtttcctttgttttcttttggttaattacggttatattttgacttatacttttctttcaataaatcaactttg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48174494 |
tgtgttccattctaggatggatccaacgtttcctttgttttcttttggttaattacggttatattttgacttatacttttctttcaataaatcaactttg |
48174593 |
T |
|
| Q |
516 |
gagtaagcatcttattataactaacatc----atcaatcttgtggtgtttagtttgagacaacttattacaagtacatgcaatcagcc---attgaagat |
608 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48174594 |
gagtaagcatc---ttataactaacatcatcgatcaatcttgtggtgtttattttgagacaacttattacaagtacatgcaatcagccaatattgaagat |
48174690 |
T |
|
| Q |
609 |
gaaatggagacaacgtgt |
626 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48174691 |
gaaatggagacaacgtgt |
48174708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University