View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_low_14 (Length: 352)
Name: NF7800_low_14
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 5638560 - 5638407
Alignment:
| Q |
26 |
catgtcccatagcagcagttataagatctaacttctcaacctgcagcacaaaaccactaatcatcaatagcagtacaatatcaaatttattta------t |
119 |
Q |
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| T |
5638560 |
catgtcccatagcagcagttataagatctaacttatcaacctgcagcacacaaccactaatcataaacagaagtacaatttaaaatttatttaaaaaaca |
5638461 |
T |
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| Q |
120 |
aaaaaacgaaaatatacacacccacgcccaaatagaacttttcagtacatactg |
173 |
Q |
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| T |
5638460 |
aaaaaacaaaaatatacacacccacgcccaaatagaacttttcagtacatactg |
5638407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 6174249 - 6174166
Alignment:
| Q |
255 |
cataccttgttgatagccagaggatttcctaggacttgcagcaccaattcgcatcgccctgctagaacagaaaacaccattcat |
338 |
Q |
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| T |
6174249 |
catacctggttgatggccagatgatttccttggagttgcagcaccgatacgcatgggcctgctagaacagtaaacaccgttcat |
6174166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 46660269 - 46660394
Alignment:
| Q |
213 |
atgatgagtaaaattttagatatggggtgctacataagttgccataccttgttgatagccagaggatttcctaggacttgcagcaccaattcgcatcgcc |
312 |
Q |
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| T |
46660269 |
atgaagagtgaaatttcagatatgagacgctatataagttgccctaccttgttgatagccagaggatttcctaggagttgcagcaccaattcgcattgcc |
46660368 |
T |
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| Q |
313 |
ctgctagaacagaaaacaccattcat |
338 |
Q |
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| T |
46660369 |
ctgctagaacagaaaacaccattcat |
46660394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 21423231 - 21423280
Alignment:
| Q |
26 |
catgtcccatagcagcagttataagatctaacttctcaacctgcagcaca |
75 |
Q |
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| T |
21423231 |
catgtcccatagcagcagttataagatctaacttctcaacctgcagcaca |
21423280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 30634445 - 30634518
Alignment:
| Q |
26 |
catgtcccatagcagcagttataagatctaacttctcaacctgcagcacaaaaccactaatcatcaatagcagta |
100 |
Q |
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| T |
30634445 |
catgtcccatagcagcagttataagatctaacttctcaacctgcagcacacgaccac-aatcaccaacagcagta |
30634518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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