View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_low_15 (Length: 350)
Name: NF7800_low_15
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_15 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 152 - 350
Target Start/End: Complemental strand, 26415359 - 26415164
Alignment:
| Q |
152 |
gaatcaaccgaagaagacaacaataacaacaacagcaacaaatcatgggaacacatcctccgccgtatgcttcccgccggcgcaccgttacccgacgaag |
251 |
Q |
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| T |
26415359 |
gaatcaaccgaagaagacaaaaa---caacaacagcaacaaatcatgggaacacatcctccgccgtatgcttcccgccggcgcaccgttacccgacgaag |
26415263 |
T |
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| Q |
252 |
accacctcgattactccatcgctgtcgaatacgaaggtcctccggttccttacgacgttcctcgaatcgatccggtggaaatcagcgcatcttcatctc |
350 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26415262 |
accacctcgattactccatcgccgtcgaatacgaaggtcctccggttccttacgacgttcctcgaatcgatccggtggaaatcagcgcatcttcttctc |
26415164 |
T |
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