View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7800_low_20 (Length: 309)
Name: NF7800_low_20
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 7903516 - 7903215
Alignment:
| Q |
1 |
taagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatc |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7903516 |
taagaactcaaatcgaggaatgaccccaatacgttagtaatcaaaccctttcgggttaacagaaccatatcttttcaagtttttgaaaccaaaccacatc |
7903417 |
T |
|
| Q |
101 |
ataaagaggccaaaagtcttcaaccatccaatgttatatcacaaacatcaggaagataaacgaaaaacatactagacgcgggtgacaaacatccggttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7903416 |
ataaagaggccaaaagtcttcaaccatccaatgttatatcacgaacattaggaacataaacgaaaaacatactagacgcgggtgacaaacatccggttac |
7903317 |
T |
|
| Q |
201 |
agacaaacaccaccaatgacccaaacaaacacaaaccaccaacctcggcagcggctccacctaccaaccaattcttcgaagcgaactagaaccaacacca |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
7903316 |
agacaaacaccgccaatgacccaaacaaacacaaaccactagcctcggcagcggctccacctactaaccaattcttccacgcgaactagaaccaacacca |
7903217 |
T |
|
| Q |
301 |
aa |
302 |
Q |
| |
|
|| |
|
|
| T |
7903216 |
aa |
7903215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 35740232 - 35740312
Alignment:
| Q |
45 |
acccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca |
126 |
Q |
| |
|
||||||| ||| |||||||||||| | |||| ||||||||||||||| ||||||| || ||||| |||||||||||||| |
|
|
| T |
35740232 |
accctttcgggctaacagaaccattccctttcgggtttttgaaaccaaatcacatcaaaacaaggcc-aaagtcttcaacca |
35740312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 52148819 - 52148737
Alignment:
| Q |
44 |
aacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca |
126 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||| | |||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52148819 |
aaccctttcgggttaacataaccatacccttttaggtttttgaaatcaaaccacatcaaaaagaggccaaaagtcttcaacca |
52148737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 48563273 - 48563123
Alignment:
| Q |
27 |
caataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca |
126 |
Q |
| |
|
||||| |||||||| || ||||||| |||||| |||||||||| ||||| |||| | |||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
48563273 |
caatatgttagtaaccagaccctttcaggttaatagaaccataccctttcaggtttataaaaccaaaccacatca-aactaggccaaaagtcttcgacca |
48563175 |
T |
|
| Q |
127 |
tccaatgttatatcacaaacatcaggaagataaacgaaaaacatactagacg |
178 |
Q |
| |
|
||| | | |||||||||| || ||| | ||| ||||||||||| ||||| |
|
|
| T |
48563174 |
cccagtctctgatcacaaacaacacgaacaaaaaggaaaaacataccagacg |
48563123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 16994489 - 16994393
Alignment:
| Q |
35 |
tagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaaccatccaat |
132 |
Q |
| |
|
||||||||| ||||||| ||||||||| || ||||| ||||||||||| |||||| | |||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
16994489 |
tagtaatcagaccctttcgggttaacaaaatcataccctttcaagttttagaaaccta-ccacatcaaaaagaggccaaaagtcttcaaccacccaat |
16994393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 28002686 - 28002574
Alignment:
| Q |
1 |
taagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatc |
100 |
Q |
| |
|
|||||||||| ||||||| |||| ||||| |||| ||| || ||||||| | ||| |||| ||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
28002686 |
taagaactcagatcgagggatgagttcaatacgttaataaccagaccctttcagattagcagagtcataccctttcaggtttttgaaaccaatccacatc |
28002587 |
T |
|
| Q |
101 |
ataaagaggccaaa |
114 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
28002586 |
a-aaagaggccaaa |
28002574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 35260242 - 35260366
Alignment:
| Q |
1 |
taagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatc |
100 |
Q |
| |
|
|||||||||||||||| | |||| ||||| ||||||| ||||||||||| ||||||||||||||||| ||| || ||| |||||||||||||||| |
|
|
| T |
35260242 |
taagaactcaaatcgatggatgaatccaatatgttagtattcaaaccctttcaggttaacagaaccataccccttc-aggtttagaaaccaaaccacatc |
35260340 |
T |
|
| Q |
101 |
ataaagaggccaaaagtcttcaacca |
126 |
Q |
| |
|
| || |||||||||| |||||||||| |
|
|
| T |
35260341 |
aaaacgaggccaaaattcttcaacca |
35260366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38011665 - 38011765
Alignment:
| Q |
1 |
taagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatc |
100 |
Q |
| |
|
|||||| ||| ||||||| |||| ||||| |||||||| || |||||| |||||| ||||||||||| || | |||||| |||||||||||||||| |
|
|
| T |
38011665 |
taagaattcagatcgagggatgagtccaatacgttagtaaccagacccttgcgggttatcagaaccatacccttacgagttttagaaaccaaaccacatc |
38011764 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
38011765 |
a |
38011765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 41566199 - 41566102
Alignment:
| Q |
28 |
aataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca |
126 |
Q |
| |
|
|||| |||||||| || |||||| ||||||||||||||||||| |||| |||| | ||| |||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
41566199 |
aatacgttagtaaccagacccttatgggttaacagaaccataccctttcgggtttataaaagcaaaccacatca-aaataggccaaaagtcttcgacca |
41566102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University