View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_low_21 (Length: 309)
Name: NF7800_low_21
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 17323215 - 17323501
Alignment:
| Q |
1 |
agtcctttttcaatacattgatgtggaaattaccatgcatagggcagcctaacacatttatgttccagcaatccacaataaattctttcaagccttcatg |
100 |
Q |
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| T |
17323215 |
agtcctttttcaatacattgatgtggaaattaccatgcatagggcagcctaacacatttatgttccagcaatccacaataaactctttcaagccttcatg |
17323314 |
T |
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| Q |
101 |
gagagtccacattttaagaaacttaaaatttgaagaaaaatggtttatgtcagttttgaactcaaaaagcaatggataatgatctgatttattcctcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17323315 |
gagagtccacattttaagaaacttaaaatttgaagaaaaatggtttatgtcaattttgaactcaaaaagcaatggataatgatctgatttattcctcaca |
17323414 |
T |
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| Q |
201 |
ataaactctagttggaagatgaataagtccactgctgtcagtccattggaggtctagcatgtgtgaatcttcgactgtgctcatgtg |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17323415 |
ataaactctagttggaagatgaataagtccactgctgtcagtccattggaggtctagcatgtgtgaatcttccactgtgctcatgtg |
17323501 |
T |
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