View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7800_low_25 (Length: 279)

Name: NF7800_low_25
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7800_low_25
NF7800_low_25
[»] chr3 (12 HSPs)
chr3 (11-262)||(5490895-5491146)
chr3 (9-262)||(5485474-5485727)
chr3 (11-253)||(5827281-5827523)
chr3 (11-253)||(5848019-5848252)
chr3 (11-261)||(5455719-5455960)
chr3 (11-262)||(5447156-5447398)
chr3 (86-253)||(20344335-20344502)
chr3 (155-262)||(5503708-5503815)
chr3 (154-262)||(5801750-5801858)
chr3 (155-262)||(5526548-5526655)
chr3 (149-262)||(5853449-5853562)
chr3 (11-59)||(5801622-5801670)
[»] chr6 (1 HSPs)
chr6 (14-262)||(25808417-25808656)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 5491146 - 5490895
Alignment:
Q  11 ttattcttgatggctccaagggtgtcatatggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaacct 110  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5491146 ttattcttgatggctccaaaggtgtcatctggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaacct 5491047  T
Q  111 tgttgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 210  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5491046 tgttgtgaaagatgcaaacagcagcggtaagaatgaggatttattgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 5490947  T
Q  211 agtaacttagttactggtccatatagatatctcacatcttggaaaaaccctc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5490946 agtaacttagttactggtccatatagatatctcacatcttggagaaaccctc 5490895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 5485727 - 5485474
Alignment:
Q  9 tattattcttgatggctccaagggtgtcatatggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaac 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||  |||||||||| |||| |||  ||||||| ||||||||||||    
T  5485727 tattattcttgatggctccgagggtgtcatatggaactccaattcatcaagaattgcagcggtgaaatctgttactgttaagctgttagattcaggaaac 5485628  T
Q  109 cttgttgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctga 208  Q
    |||||| |||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5485627 cttgttttgaaagatgcaaacagcagcgatgagaatgaggatttcttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctga 5485528  T
Q  209 aaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5485527 aaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctc 5485474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 5827281 - 5827523
Alignment:
Q  11 ttattcttgatggctccaagggtgtcatatggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaacct 110  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  5827281 ttattcttgatggctccaaaggtgtcatctggaactccaattcatcaagaactgcggcggtgaaatcagttattgtgcagcttttggattcgggaaacct 5827380  T
Q  111 tgttgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 210  Q
    ||||||||||||| ||| ||| ||   ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |    
T  5827381 tgttgtgaaagatgcaagcagaagttttaagaatgaggattttttgtgggaaagttttaattatcctggtgacactttccttgctggaatgaagctgaga 5827480  T
Q  211 agtaacttagttactggtccatatagatatctcacatcttgga 253  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  5827481 agtaacttagttactggtccatatagatatctgacttcttgga 5827523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 5848019 - 5848252
Alignment:
Q  11 ttattcttgatggctccaagggtgtcatatggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaacct 110  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||| | |  | | ||||||||||||||||||||||| |||||||||||||||||||    
T  5848019 ttattcttgatggctccaaaggtgtcatctggaactccaattcatcaggaattgtggcggtgaaatcagttattgtgcagttgttggattcaggaaacct 5848118  T
Q  111 tgttgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 210  Q
    ||||| ||||||| ||||||||           | || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5848119 tgttgggaaagatgcaaacagctc---------tcagaactttttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 5848209  T
Q  211 agtaacttagttactggtccatatagatatctcacatcttgga 253  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  5848210 agtaacttagttactggtccatatagatatctcacttcttgga 5848252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 5455960 - 5455719
Alignment:
Q  11 ttattcttgatggctccaagggtgtcatatggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaacct 110  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||| |  |   |||||||||||||| |||||||| |||||||||||||||||||    
T  5455960 ttattcttgatggctccaaaggtgtcatctggaacaccaattcatcaagaattgtagcggtgaaatcagttgttgtgcagttgttggattcaggaaacct 5455861  T
Q  111 tgttgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 210  Q
    ||||||||||||| || ||||||          | || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5455860 tgttgtgaaagatgcagacagcac---------tcagaactttttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 5455770  T
Q  211 agtaacttagttactggtccatatagatatctcacatcttggaaaaaccct 261  Q
    |||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  5455769 agtaacttagttacgggtccatatagatatctcacttcttggagaaaccct 5455719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 5447398 - 5447156
Alignment:
Q  11 ttattcttgatggctccaagggtgtcatatggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaacct 110  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||||| || | | |||||||| ||||| |||||||| |||||||||||||||||||    
T  5447398 ttattcttgatggctccaaaggtgacatctggaactccaattcatcaagaactgtggcggtgaaaacagttgttgtgcagttgttggattcaggaaacct 5447299  T
Q  111 tgttgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaa 210  Q
    |||||||||||||  ||||||||          | || | || ||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  5447298 tgttgtgaaagatgtaaacagcac---------tcagaactttttgtgggaaagttttgactatcctggtgacactttccttcctggaatgaagctgaaa 5447208  T
Q  211 agtaacttagttactggtccatatagatatctcacatcttggaaaaaccctc 262  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||||    
T  5447207 agtaacttagttactggtccatatagatatctcacatcatggagaagccctc 5447156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 20344502 - 20344335
Alignment:
Q  86 tgcagctgttggattcaggaaaccttgttgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacac 185  Q
    ||||| ||||||||||||||||||||||||| |||||| |||| |||||| || || ||||||| || ||||||||||| ||||||||||||||| ||||    
T  20344502 tgcagttgttggattcaggaaaccttgttgtaaaagatgcaaatagcagcagtgaggatgaggagtttttgtgggaaagctttgattatcctggtgacac 20344403  T
Q  186 tttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttgga 253  Q
     || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  20344402 gttgcttgctggaatgaagctgaaaagtaacttagtgactggtccatatagatatctcacttcttgga 20344335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 5503815 - 5503708
Alignment:
Q  155 tgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaa 254  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5503815 tgtgggaaagttttgactatcccggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaa 5503716  T
Q  255 aaaccctc 262  Q
    | ||||||    
T  5503715 agaccctc 5503708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 154 - 262
Target Start/End: Original strand, 5801750 - 5801858
Alignment:
Q  154 ttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttgga 253  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5801750 ttgtgggaaagttttgactatcctggtaacactttccttcctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttgga 5801849  T
Q  254 aaaaccctc 262  Q
     || |||||    
T  5801850 gaagccctc 5801858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 5526655 - 5526548
Alignment:
Q  155 tgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaa 254  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  5526655 tgtgggaaagttttgactatcccggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggag 5526556  T
Q  255 aaaccctc 262  Q
    ||||||||    
T  5526555 aaaccctc 5526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 149 - 262
Target Start/End: Original strand, 5853449 - 5853562
Alignment:
Q  149 atttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatc 248  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5853449 attttttgtgggaaagttttgattatcctggtaacaatttccttgcgggaatgaagctgaaaagtaatttagttactggtccatatagatatctcacatc 5853548  T
Q  249 ttggaaaaaccctc 262  Q
    ||||| || |||||    
T  5853549 ttggagaagccctc 5853562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 5801622 - 5801670
Alignment:
Q  11 ttattcttgatggctccaagggtgtcatatggaactccaattcatcaag 59  Q
    ||||||||||||||||||| |||||||| |||  |||||||||| ||||    
T  5801622 ttattcttgatggctccaaaggtgtcatctggtcctccaattcaacaag 5801670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 25808417 - 25808656
Alignment:
Q  14 ttcttgatggctccaagggtgtcatatggaactccaattcatcaagcacagcgacggtgaaatcagttattgtgcagctgttggattcaggaaaccttgt 113  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||| || | | |||||||| ||||| |||||||| ||||||||||||||||||||||    
T  25808417 ttcttgatggctccaaaggtgacatctggaactccaattcatcaagaactgtggcggtgaaaacagttgttgtgcagttgttggattcaggaaaccttgt 25808516  T
Q  114 tgtgaaagatacaaacagcagcggtaagaatgaggatttgttgtgggaaagttttgattatcctggtaacactttccttgctggaatgaagctgaaaagt 213  Q
    ||||||||||  ||||||||          | || | || ||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  25808517 tgtgaaagatgtaaacagcac---------tcagaactttttgtgggaaagttttgactatcctggtgacactttccttcctggaatgaagctgaaaagt 25808607  T
Q  214 aacttagttactggtccatatagatatctcacatcttggaaaaaccctc 262  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||||    
T  25808608 aacttagttactggtccatatagatatctcacatcatggagaagccctc 25808656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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