View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7800_low_29 (Length: 256)
Name: NF7800_low_29
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 7903755 - 7903556
Alignment:
| Q |
16 |
atattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacgacgatacaatgatataaatcagacctagaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7903755 |
atattaaataaaaagaaagagatactaagattggaagatattagacctgacacagatacaacctaaacgacgatacaaggatataaatcagacctagaag |
7903656 |
T |
|
| Q |
116 |
atcagctctaatctattctaacaaaaattcaatcattacatgcgcaacttaggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7903655 |
atcagctctaatctattctaacaaaaattcaatcattacatgcgcaacttaggcagacaagacgacttgaaacttgcagatctcaacagatcgggaaaca |
7903556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 41907418 - 41907350
Alignment:
| Q |
16 |
atattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacga |
85 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| ||||| ||||||||| |||| | |||| |||||| |
|
|
| T |
41907418 |
atattaaataaaaagaaa-agatacaaagattgggggacatcagacctgacccaggaataacccaaacga |
41907350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 10623494 - 10623444
Alignment:
| Q |
166 |
aggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat |
216 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
10623494 |
aggcagacaagacaacttgaaacctgcagatctcaacaaatctggaaacat |
10623444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 16994628 - 16994588
Alignment:
| Q |
165 |
taggcagacaagacgacttgaaacttgcagatctcaacaaa |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16994628 |
taggcagacaagacgacttgaaatctgcagatctcaacaaa |
16994588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 24957327 - 24957452
Alignment:
| Q |
20 |
taaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacgacgatacaatgatataaatcagacctagaagatca |
119 |
Q |
| |
|
|||||||||||| |||||||| | || | | |||||||||||| || ||||||||||||||| ||||||| ||||||| ||||||||| |||| |
|
|
| T |
24957327 |
taaataaaaagatagagatacaatgactcggggacattagacct-acccaggtacaacctaaatagggatacaacaatataaaccagacctagtggatcc |
24957425 |
T |
|
| Q |
120 |
gctctaatctattctaacaaaaattca |
146 |
Q |
| |
|
| ||||||||| ||||||||||||| |
|
|
| T |
24957426 |
accctaatctatcttaacaaaaattca |
24957452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 24957660 - 24957708
Alignment:
| Q |
168 |
gcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat |
216 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||| || |||||||| |
|
|
| T |
24957660 |
gcagacaagactacttgaaacttgcaaatctcaacagatttggaaacat |
24957708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 18402790 - 18402838
Alignment:
| Q |
168 |
gcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
18402790 |
gcagacaagacgacttgaaatctgcagatctcaacaaatctggaaacat |
18402838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 10330288 - 10330211
Alignment:
| Q |
16 |
atattaaataaaaagaaagagatac-taagattggaagacattagacctgacacaggtacaacctaaacgacgataca |
92 |
Q |
| |
|
|||||||||||||| |||| |||| ||| | ||| ||||||||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
10330288 |
atattaaataaaaataaagggatagataaactaggatgacattagacctgacccaggtataacctaaacgaggataca |
10330211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 3008748 - 3008798
Alignment:
| Q |
166 |
aggcagacaagacgacttgaaacttgcagatctcaacaaatcgggaaacat |
216 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
3008748 |
aggcagacaatacgacttgaaacctacagatctcaacaaatctggaaacat |
3008798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 21007053 - 21007117
Alignment:
| Q |
13 |
tcaatattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacc |
78 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | | ||||||||||||| ||||||||||| |
|
|
| T |
21007053 |
tcaatattaaataaaaagaaagagatacagagatttg-gggcattagacctgactcaggtacaacc |
21007117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 33299440 - 33299379
Alignment:
| Q |
17 |
tattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacc |
78 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||||||||||||||| || |||||||| |
|
|
| T |
33299440 |
tattaaataaaaacaaagagatacagagattgggggacattagacctgacccatgtacaacc |
33299379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 19932127 - 19932221
Alignment:
| Q |
52 |
gacattagacctgacacaggtacaacctaaacgacgatacaatgatataaatcagacctagaagatcagctctaatctattctaacaaaaattca |
146 |
Q |
| |
|
||||||| || |||| || |||||||| ||||| |||||| ||||||||||||||||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
19932127 |
gacattatacttgacccaagtacaacccaaacgggaatacaacaatataaatcagacctagtggatcaaccctaatctatcttaacaaaaattca |
19932221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 35193566 - 35193498
Alignment:
| Q |
16 |
atattaaataaaaagaaagagatactaagattggaagacattagacctgacacaggtacaacctaaacga |
85 |
Q |
| |
|
||||||||||||||||||||||||| ||| || || |||| |||||||| ||| |||||||||||||| |
|
|
| T |
35193566 |
atattaaataaaaagaaagagatacagagaatgagag-cattggacctgacccagttacaacctaaacga |
35193498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 48563404 - 48563366
Alignment:
| Q |
165 |
taggcagacaagacgacttgaaacttgcagatctcaaca |
203 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
48563404 |
taggcatacaagacgacttgaaacctgcagatctcaaca |
48563366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University