View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_low_32 (Length: 240)
Name: NF7800_low_32
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_32 |
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| [»] chr5 (6 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 30480325 - 30480102
Alignment:
| Q |
17 |
agaagacatctttgaattcatttatgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgacaacctaatgggtcagattatcgttatggc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30480325 |
agaagacatctttgaattcatttatgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgtcaacctaatgggtcagattatcgttatggc |
30480226 |
T |
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| Q |
117 |
gtctccacttccttatgatccttcatagtattgatatggtatagatcttcaattcctatagtattaagatgttcaactccatatactactagatttcaat |
216 |
Q |
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| T |
30480225 |
gtctccacttccttatgatccttcatagtattgatatggtatagatcttcaattcctatagtattaagatgttcaactccatatactactagatttcaat |
30480126 |
T |
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| Q |
217 |
ttaatttcacgtgttcatgaaaat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
30480125 |
ttaatttcacgtgttcatgaaaat |
30480102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 30716689 - 30716880
Alignment:
| Q |
36 |
atttatgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgacaacctaatgggtcagattatcgttatggcgtctccacttccttatgat |
135 |
Q |
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| T |
30716689 |
atttatgtgaaccttgtgatttt-gtctgagacgaaatcgattaaaattgtcaaccttatgggtcagattatcgttatcgcgtttccacttccat-tgat |
30716786 |
T |
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| Q |
136 |
ccttcatagtattgatatggtatagatcttcaattcctatagtattaagatgttcaactccatatactactagatttcaatttaatttcacgtgttcatg |
235 |
Q |
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| T |
30716787 |
gc----tggtattgataagatatagatcttc-attcctatagtatta--attttaa----catatactactagatttcaatttgatttcatgtattcatg |
30716875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 30432856 - 30432701
Alignment:
| Q |
17 |
agaagacatctttgaattcatttatgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgacaacctaatgggtcagattatcgttatggc |
116 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||| |||||| |||||| || ||||| ||||||||||| || |
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| T |
30432856 |
agaagacatccttgaattgatttatgtgaaacttgtgatttttatctgag-cgaaatc-----aagatgtcaaccttattggtcatattatcgttatcgc |
30432763 |
T |
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| Q |
117 |
gtctccacttccttatgatccttcatagtattgatatggtatagatcttcaattcctatagtattaa |
183 |
Q |
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| T |
30432762 |
gtctccactttcgt-taatgc----tggtattgatatggtatagatcttcaattcctatagtattaa |
30432701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 30680524 - 30680660
Alignment:
| Q |
40 |
atgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgacaacctaatgggtcagattatcgttatggcgtctccacttccttatgatcctt |
139 |
Q |
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| T |
30680524 |
atgtgaaccttgtgatttt-gtctcagacgaaatcgattaaaattgtcaaccttatgggtcagattatcgttatcgcatctccacttccgt-tgatgc-- |
30680619 |
T |
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| Q |
140 |
catagtattgatatggtatagatcttcaattcctatagtattaa |
183 |
Q |
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| T |
30680620 |
--tggtattgatatggtatagatcttc-attcctatagtattaa |
30680660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 183
Target Start/End: Complemental strand, 30746426 - 30746286
Alignment:
| Q |
36 |
atttatgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgacaacctaatgggtcagattatcgttatggcgtctccacttccttatgat |
135 |
Q |
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| T |
30746426 |
atttatgtgaaccttgtgatttt-gtctcagacgaaatcgattaaaattgtcaaccttatgggtcagattattgttatcgcatctccacttccgt-tgat |
30746329 |
T |
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| Q |
136 |
ccttcatagtattgatatggtatagatcttcaattcctatagtattaa |
183 |
Q |
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| T |
30746328 |
gc----tggtattgatatggcatagatcttc-attcctatagtattaa |
30746286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 30056681 - 30056560
Alignment:
| Q |
56 |
ttttgtctgagacgaaatcaattaaagatgacaacctaatgggtcagattatcgttatggcgtctccacttccttatgatccttcatagtattgatatgg |
155 |
Q |
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| T |
30056681 |
ttttgtctgagacaaaatcgattaaaattgtcaaccttatacgtcagattatcgttatcgcgtttccacttccat-tgatgc----tggtattgatatgg |
30056587 |
T |
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| Q |
156 |
tatagatcttcaattcctatagtattaa |
183 |
Q |
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| T |
30056586 |
tatagatcttc-attcctatagtattaa |
30056560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 20302715 - 20302930
Alignment:
| Q |
17 |
agaagacatctttgaattcatttatgtgaaacttgtgatttttgtctgagacgaaatcaattaaagatgacaacctaatgggtcagattatcgttatggc |
116 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| || |
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| T |
20302715 |
agaagacatctttgaattgatttatgtgaaacatgtgatttttgtctcagacgaaatcaattaaagatgtcaacctgatgggtcagattatcgttatcgc |
20302814 |
T |
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| Q |
117 |
gtctccacttccttatgatccttcatagtattgatatggtatagatcttcaattcctatagtattaagatgttcaactccatatactactagatttcaat |
216 |
Q |
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| T |
20302815 |
gtctacacttccgt-tgatgc----tggtattgatatggtatagaacttcaat---tatagtattaagatgttcaactccatatactactagatttgaat |
20302906 |
T |
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| Q |
217 |
ttaatttcacgtgttcatgaaaat |
240 |
Q |
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|| |||||| |||||||||||||| |
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| T |
20302907 |
tttatttcatgtgttcatgaaaat |
20302930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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