View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7800_low_36 (Length: 217)
Name: NF7800_low_36
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 5485539 - 5485352
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5485539 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
5485440 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttctcact |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5485439 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttttcact |
5485352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 5503773 - 5503586
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5503773 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaagaccctcaagatcctgctgagggtgagtgttcatataagat |
5503674 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttctcact |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
5503673 |
agatacacatggttttcctcaactggttactgcaaagggagcaaaggttctgtatagaggagggtcatggaatggatttcttttcact |
5503586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 5490960 - 5490774
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5490960 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggagaaaccctcaagatcctgctgaaggtgagtgttcgtataagat |
5490861 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttctcac |
206 |
Q |
| |
|
||||| |||||||||||||||||| |||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
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| T |
5490860 |
agatacacatggttttcctcaactagttactgcaaagggagcaaacgttctgtatagaggagggtcatggaatggatttcttttcac |
5490774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 5801793 - 5801974
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
5801793 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggagaagccctcaagatcctgctgaaggtgagtgttcatataggat |
5801892 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttctt |
201 |
Q |
| |
|
|||||| | ||||||||||||||| |||| | |||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
5801893 |
agatatgcctggttttcctcaacttgttactgcaaagggagcaacagttctgtatagaggagggtcatggaatggatttctt |
5801974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 5447221 - 5447034
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5447221 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcatggagaagccctcaagatcctgctgaaggtgagtgttcgtataagat |
5447122 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttctcact |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||| || |||| | |||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
5447121 |
agatacacatggttttcctcaactggttactgcaaacggggcaatatttctgtatagagcagggtcatggaatggatttcttttcact |
5447034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 5853497 - 5853684
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
5853497 |
gaatgaagctgaaaagtaatttagttactggtccatatagatatctcacatcttggagaagccctcaagatcctgctgaaggtgagtgttcatataggat |
5853596 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttctcact |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||| || | || | |||||||||||||||||||||||||||||| ||||| |
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|
| T |
5853597 |
agatatgcatggttttcctcaactggttactgaaaagggagaaagatttttgtatagaggagggtcatggaatggatttcttttcact |
5853684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 5455783 - 5455596
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
5455783 |
gaatgaagctgaaaagtaacttagttacgggtccatatagatatctcacttcttggagaaaccctgatgatcctgctgaaggtgagtgttcatataagat |
5455684 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttctcact |
207 |
Q |
| |
|
||||| |||||||||||| |||||| ||| | ||||||| |||| | |||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
5455683 |
agatacacatggttttccccaactgcttactgcaaagggggcaataattctgtatagagcagggtcatggaatggatttcttttcact |
5455596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 5526613 - 5526432
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
5526613 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagaaaccctcaagatcctgctgaaggtgagtattcatataggat |
5526514 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttctt |
201 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| | |||| ||||||||||| ||||||||||||||||| |
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|
| T |
5526513 |
cgatatggatggttttcctcaactggttacagtaaagggagcaagaattctgtatagaggaggaccatggaatggatttctt |
5526432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 20344391 - 20344215
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || | || |||||||||||| |||||||| ||| |||| ||| |
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|
| T |
20344391 |
gaatgaagctgaaaagtaacttagtgactggtccatatagatatctcacttcttggagaacctctgaagatcctgctgtaggtgagttttcgtataggat |
20344292 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggat |
196 |
Q |
| |
|
|||| |||||||||||||||| |||| | |||||||| ||| | || | ||||||||||||||||||||||||| |
|
|
| T |
20344291 |
cgatactcatggttttcctcaacaagttattgcaaagggaacaacaattatgtatagaggagggtcatggaatggat |
20344215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 5827467 - 5827643
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| | | || ||||||||||||| ||||||| ||| |||| ||| |
|
|
| T |
5827467 |
gaatgaagctgagaagtaacttagttactggtccatatagatatctgacttcttggagatcctctgaagatcctgctgacggtgagttttcgtataggat |
5827566 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggat |
196 |
Q |
| |
|
||||| |||||||||||||||| ||||| | |||||||| || | |||| |||||||| |||||||||||||||| |
|
|
| T |
5827567 |
agatactcatggttttcctcaacaggttattgcaaagggaaaaacaattctgtatagaggtgggtcatggaatggat |
5827643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 5848196 - 5848318
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | || ||||||||||||| || |||| |||| | ||| |
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|
| T |
5848196 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacttcttggagatcctctgaagatcctgctgacggcgagttttcagtgaggat |
5848295 |
T |
|
| Q |
120 |
agatatacatggttttcctcaac |
142 |
Q |
| |
|
||||| || ||||||||||||| |
|
|
| T |
5848296 |
agatactcacggttttcctcaac |
5848318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 25808591 - 25808778
Alignment:
| Q |
20 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcttggaaaaaccctcaagatcctgctgaaggtgagtgttcatataagat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
25808591 |
gaatgaagctgaaaagtaacttagttactggtccatatagatatctcacatcatggagaagccctcaagatcctgctgaaggtgagtgttcgtataagat |
25808690 |
T |
|
| Q |
120 |
agatatacatggttttcctcaactggttaattcaaagggagcaaaagttctatatagaggagggtcatggaatggatttcttctcact |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||| | |||| || |||| | |||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
25808691 |
agatacacatggttttcctcaactggttactgcaaacggggcaatatttctgtatagagcagggtcatggaatggatttcttttcact |
25808778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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