View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_low_4 (Length: 515)
Name: NF7800_low_4
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 494
Target Start/End: Original strand, 51836654 - 51837118
Alignment:
| Q |
22 |
gtgcatatatggctgaatcagattctacagtactggtgnnnnnnnnnnnnnnnnggttatggccaagcagattaatgtggtgtattttgattagttatta |
121 |
Q |
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| T |
51836654 |
gtgcatatatggctgaatcagattctacagtactggtgaaaaaacaaaataaaaggttatggccaagcagattaatgtggtgtattttgattagttatta |
51836753 |
T |
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| Q |
122 |
gtcccttagttgaattttaggaccactcaaggctagaagatgagcgcatatatcatatgcatatgcatgtatctttcaagaaattaattcaacaaagcta |
221 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51836754 |
gtcccttatttgaattttaggaccactcaaggctagaagatgagcgcatatatcatatgcatatgcatgtatctttcaagaaattaattcaacaaagcta |
51836853 |
T |
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| Q |
222 |
ttgtttttacaaaatcnnnnnnngcttatatactaacaggaatataaattattgttttttaaataaatgttggtagttggtttgttagaatagtattttt |
321 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51836854 |
ttgtttttacagaatcaaaaaaagcttatatactaacaggaatataaattattgttttttaaataaatgttggtagttggtttgttaaaatagtattttt |
51836953 |
T |
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| Q |
322 |
actctttgttcatatttaaacctacgacctcaaactcatattcttttagttcaaatcag--------ttgaactatctaatccctaacaagaaaatatat |
413 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
51836954 |
actctttgttcagatttaaacctacgacctcaaactcatattcttttagttcaaatcagttgaacacttgaactatctaacccctaacaag--------- |
51837044 |
T |
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| Q |
414 |
ttacaacaaacagggagataatgataccattgtggttgcatatgagagagttaaggagtagagcacaggcaaaaaggagtg |
494 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51837045 |
-------aaacagggaaataatgataccattgtggttgcatatgagagagttaaggagtagagcacaggcaaaaaggagtg |
51837118 |
T |
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