View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7800_low_5 (Length: 511)

Name: NF7800_low_5
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7800_low_5
NF7800_low_5
[»] chr6 (15 HSPs)
chr6 (16-229)||(2887764-2887977)
chr6 (16-229)||(2889489-2889702)
chr6 (314-511)||(2887484-2887679)
chr6 (314-511)||(2889206-2889401)
chr6 (18-163)||(2901774-2901921)
chr6 (399-511)||(24508926-24509038)
chr6 (402-505)||(21936781-21936884)
chr6 (399-511)||(20752216-20752328)
chr6 (399-511)||(21275767-21275879)
chr6 (399-511)||(24509697-24509809)
chr6 (399-511)||(11183264-11183376)
chr6 (78-141)||(2856984-2857047)
chr6 (409-511)||(21937564-21937666)
chr6 (42-82)||(2854062-2854102)
chr6 (190-229)||(2891953-2891992)
[»] chr8 (12 HSPs)
chr8 (399-511)||(10341055-10341167)
chr8 (399-511)||(18608726-18608838)
chr8 (399-511)||(34108223-34108335)
chr8 (399-511)||(14315009-14315121)
chr8 (399-511)||(14318713-14318825)
chr8 (399-511)||(18494274-18494386)
chr8 (399-511)||(26981974-26982086)
chr8 (399-511)||(26987087-26987199)
chr8 (399-511)||(25953257-25953369)
chr8 (399-503)||(43956947-43957051)
chr8 (433-504)||(18885065-18885136)
chr8 (409-475)||(1781869-1781935)
[»] chr1 (16 HSPs)
chr1 (399-505)||(35626172-35626278)
chr1 (399-505)||(10186677-10186783)
chr1 (399-505)||(17414634-17414740)
chr1 (399-503)||(43358755-43358859)
chr1 (403-511)||(44524124-44524232)
chr1 (401-503)||(19310826-19310928)
chr1 (399-511)||(1187822-1187933)
chr1 (399-511)||(3465467-3465579)
chr1 (399-511)||(3468061-3468173)
chr1 (399-511)||(28574291-28574403)
chr1 (399-511)||(28598303-28598415)
chr1 (399-511)||(13654329-13654443)
chr1 (399-494)||(21431770-21431865)
chr1 (429-511)||(16051200-16051282)
chr1 (463-511)||(29681584-29681632)
chr1 (463-510)||(48366213-48366260)
[»] chr4 (16 HSPs)
chr4 (399-511)||(18670834-18670946)
chr4 (399-511)||(32429381-32429493)
chr4 (399-505)||(18737162-18737268)
chr4 (399-505)||(34128335-34128441)
chr4 (399-505)||(18716489-18716595)
chr4 (399-511)||(30019948-30020060)
chr4 (399-505)||(47071408-47071514)
chr4 (399-511)||(34279589-34279701)
chr4 (399-511)||(35096022-35096134)
chr4 (399-511)||(54859255-54859367)
chr4 (399-511)||(14643828-14643940)
chr4 (399-511)||(35090909-35091021)
chr4 (424-511)||(3424823-3424910)
chr4 (416-477)||(34602060-34602121)
chr4 (424-480)||(3409721-3409781)
chr4 (399-447)||(25618387-25618435)
[»] chr5 (13 HSPs)
chr5 (18-148)||(14707572-14707702)
chr5 (399-505)||(35368989-35369095)
chr5 (399-511)||(2022958-2023070)
chr5 (395-511)||(4555647-4555763)
chr5 (399-511)||(9877637-9877749)
chr5 (399-511)||(39903839-39903951)
chr5 (399-511)||(39908952-39909064)
chr5 (402-505)||(13556406-13556509)
chr5 (399-511)||(9872522-9872634)
chr5 (399-470)||(43540857-43540928)
chr5 (431-481)||(25184116-25184166)
chr5 (451-511)||(43378431-43378491)
chr5 (193-229)||(14707417-14707453)
[»] chr7 (14 HSPs)
chr7 (399-511)||(14610358-14610470)
chr7 (399-511)||(12851668-12851780)
chr7 (399-511)||(12856783-12856895)
chr7 (399-511)||(26051015-26051127)
chr7 (399-511)||(26056128-26056240)
chr7 (399-511)||(26060374-26060486)
chr7 (399-511)||(26065487-26065599)
chr7 (399-511)||(4181480-4181591)
chr7 (410-505)||(11056625-11056720)
chr7 (409-505)||(5440396-5440492)
chr7 (409-505)||(5449406-5449502)
chr7 (415-511)||(37459955-37460051)
chr7 (432-511)||(35352422-35352501)
chr7 (463-511)||(5436692-5436740)
[»] chr3 (24 HSPs)
chr3 (399-511)||(18024246-18024358)
chr3 (402-511)||(20891053-20891162)
chr3 (399-511)||(3187552-3187664)
chr3 (399-511)||(5458110-5458222)
chr3 (399-511)||(5481586-5481698)
chr3 (399-511)||(6858153-6858265)
chr3 (399-511)||(8458305-8458417)
chr3 (399-511)||(8464744-8464856)
chr3 (399-511)||(31081605-31081717)
chr3 (399-511)||(1302343-1302455)
chr3 (399-511)||(4049801-4049913)
chr3 (399-511)||(6853050-6853162)
chr3 (399-511)||(10591393-10591505)
chr3 (399-511)||(10673036-10673148)
chr3 (399-511)||(10678151-10678263)
chr3 (399-511)||(31076500-31076612)
chr3 (399-505)||(33703299-33703405)
chr3 (399-511)||(4054935-4055047)
chr3 (399-511)||(33702698-33702810)
chr3 (399-511)||(49784490-49784602)
chr3 (399-511)||(29827423-29827530)
chr3 (399-505)||(10584956-10585062)
chr3 (18-86)||(34502697-34502765)
chr3 (18-86)||(27614109-27614176)
[»] chr2 (7 HSPs)
chr2 (399-511)||(14917480-14917592)
chr2 (415-505)||(716267-716357)
chr2 (399-505)||(30283539-30283645)
chr2 (399-511)||(17720624-17720736)
chr2 (399-511)||(42780178-42780289)
chr2 (399-511)||(45120380-45120492)
chr2 (399-505)||(16284437-16284544)
[»] scaffold0223 (1 HSPs)
scaffold0223 (399-511)||(2117-2229)
[»] scaffold0006 (1 HSPs)
scaffold0006 (399-511)||(144090-144204)
[»] scaffold0005 (1 HSPs)
scaffold0005 (399-511)||(173352-173464)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 2887977 - 2887764
Alignment:
Q  16 acttatcaacattttcaaaattgtataaataagcacacctcactagtctagcatatgataacaagttaatagcatctttgattttatttgtcaagaaagt 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887977 acttatcaacattttcaaaattgcataaataagcacacctcactagtctagcatatgataacaagttaatagcatctttgattttatttgtcaagaaagt 2887878  T
Q  116 cgagttgaaatggaagcttctttgaagatggtggtaatgctttttgctcttgtgagcataatgtatttcataatataattatatgaataaatgagaaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2887877 cgagttgaaatggaagcttctttgaagatggtggtaatgctttttgctcttgtgagcataatgtatttcataatataattatatgaataaatgagaaatt 2887778  T
Q  216 ataatttcatcttc 229  Q
    ||||||||||||||    
T  2887777 ataatttcatcttc 2887764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 2889702 - 2889489
Alignment:
Q  16 acttatcaacattttcaaaattgtataaataagcacacctcactagtctagcatatgataacaagttaatagcatctttgattttatttgtcaagaaagt 115  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2889702 acttaacaacattttcaaaattggataaataagcacacctcactagtctagcatatgataacaagttaatagcatctttgattttatttgtcaagaaagt 2889603  T
Q  116 cgagttgaaatggaagcttctttgaagatggtggtaatgctttttgctcttgtgagcataatgtatttcataatataattatatgaataaatgagaaatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2889602 cgagttgaaatggaagcttctttgaagatggtggtaatgctttttgctcttgtgagcataatgtatttcataatataattatatgaataaatgagaaatt 2889503  T
Q  216 ataatttcatcttc 229  Q
    ||||||||||||||    
T  2889502 ataatttcatcttc 2889489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 314 - 511
Target Start/End: Complemental strand, 2887679 - 2887484
Alignment:
Q  314 gtttgttaatgcaaatactcatctacatagacactactaacacacacagagagaatcagaatcagttggacacactataacacacaattttgttccatta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  2887679 gtttgttaatgcaaatactcatctacatagacactactaacacacacagaga--atcagaatcaattggacacactataacacacaattttgttccatta 2887582  T
Q  414 ccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2887581 ccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgctggaatcataaatctgtaaaatagtgtta 2887484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 314 - 511
Target Start/End: Complemental strand, 2889401 - 2889206
Alignment:
Q  314 gtttgttaatgcaaatactcatctacatagacactactaacacacacagagagaatcagaatcagttggacacactataacacacaattttgttccatta 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  2889401 gtttgttaatgcaaatactcatctacatagacactactaacacacacagaga--atcagaatcaattggacacactataacacacaattttgttccatta 2889304  T
Q  414 ccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2889303 ccaacataattctccctcattctcttactctaaatcattcatcaactctctaatgcatgagtgaattgctggaatcataaatctgtaaaatagtgtta 2889206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 2901921 - 2901774
Alignment:
Q  18 ttatcaacattttcaaaattgtataaataag--cacacctcactagtctagcatatgataacaagttaatagcatctttgattttatttgtcaagaaagt 115  Q
    ||||||||||||||||| ||||||||||| |  ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |  ||||    
T  2901921 ttatcaacattttcaaatttgtataaataggtacacacatcactagtctagcatatcataacaagttaataacatctttgattttatttgtcgaacaagt 2901822  T
Q  116 cgagttgaaatggaagcttctttgaagatggtggtaatgctttttgct 163  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||    
T  2901821 tgagttgaaatggaggcttctttgaagatggtggtaatgctttttgct 2901774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 24508926 - 24509038
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    |||| |||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  24508926 aattatgttacattaacaacataattctccatcattcttttactctaaatcatccatcaattctctaatgcatgagtgaattgttggaatcataaatttg 24509025  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  24509026 taaaatactgtta 24509038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 21936781 - 21936884
Alignment:
Q  402 tttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaa 501  Q
    |||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  21936781 tttgttacattaacaacataattctccatcattctcatactctaaatcatctatcaattctctaatgcatgagtgaattgctggaaccataaatctgtaa 21936880  T
Q  502 aata 505  Q
    ||||    
T  21936881 aata 21936884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 20752216 - 20752328
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||    
T  20752216 aattttgttacattaacaacataattcttcaccattctcttactataagtcatccatcaattctctgatgcatgagtgaattgttggaaccataaatctg 20752315  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  20752316 taaaatactgtta 20752328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 21275879 - 21275767
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  21275879 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 21275780  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  21275779 taaaatactgtta 21275767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 24509809 - 24509697
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    |||| |||| ||||| |||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||    
T  24509809 aattatgttacattaacaacataattctccatcattcttttactttaaatcatccatcaattctctaatgcattagtgaattgttggaaccataaatttg 24509710  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  24509709 taaaatactgtta 24509697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 11183264 - 11183376
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| || ||  |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| ||||| || || |||||| |||    
T  11183264 aattttgttacaataataacataattctctctcattctcttactctaaatcatcaatcaattctctaatgcatgagtaaattgctgaaaccataaacctg 11183363  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  11183364 taaaatactgtta 11183376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 2856984 - 2857047
Alignment:
Q  78 aagttaatagcatctttgattttatttgtcaagaaagtcgagttgaaatggaagcttctttgaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2856984 aagttaatagcatctttgattttatttgtcaagaaagtcgagtagaaatggaagcttctttgaa 2857047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 21937666 - 21937564
Alignment:
Q  409 cattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtg 508  Q
    ||||| |||||||||| ||| ||| ||||||| |||||| |||||||||| |||| ||||||||||||||||| ||||| ||||||| |||| |||| ||    
T  21937666 cattaacaacataattttccatcactctcttattctaaaacatccatcaattctcaaatgcatgagtgaattgctggaaccataaatttgtataatattg 21937567  T
Q  509 tta 511  Q
    |||    
T  21937566 tta 21937564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 2854062 - 2854102
Alignment:
Q  42 aaataagcacacctcactagtctagcatatgataacaagtt 82  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  2854062 aaataagcacacctgactagtgtagcatatgataacaagtt 2854102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 2891992 - 2891953
Alignment:
Q  190 ataattatatgaataaatgagaaattataatttcatcttc 229  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  2891992 ataattatatgaataaaagagaaactataatttcatcttc 2891953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 10341055 - 10341167
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  10341055 aattttgttgcattaacaacataattctccctcattctcttactctaaatcatccataaattctctaatgcatgagtgaattgctggaatcataaatctg 10341154  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  10341155 taaaatattgtta 10341167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 18608726 - 18608838
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||  |||||||||    
T  18608726 aattttgttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagttaattgacggaacgataaatctg 18608825  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  18608826 taaaatactgtta 18608838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 34108335 - 34108223
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  34108335 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 34108236  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  34108235 taaaatactgtta 34108223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 14315009 - 14315121
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  14315009 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 14315108  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  14315109 taaaatactgtta 14315121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 14318713 - 14318825
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  14318713 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 14318812  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  14318813 taaaatactgtta 14318825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 18494274 - 18494386
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  18494274 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 18494373  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  18494374 taaaatactgtta 18494386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 26981974 - 26982086
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  26981974 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 26982073  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  26982074 taaaatactgtta 26982086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 26987087 - 26987199
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  26987087 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 26987186  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  26987187 taaaatactgtta 26987199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 25953257 - 25953369
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||||||| | ||| ||||||| ||    
T  25953257 aattttgttacattaacaacataattctccatcattctcatactctaaatcatccatcaattgtctaatgcatgagtgaattgcttgaaccataaatatg 25953356  T
Q  499 taaaatagtgtta 511  Q
    || |||| |||||    
T  25953357 tacaatactgtta 25953369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 43956947 - 43957051
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| || || ||||||| ||    
T  43956947 aattttgttgcattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgagtgaattgctgaaaccataaatttg 43957046  T
Q  499 taaaa 503  Q
    |||||    
T  43957047 taaaa 43957051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 433 - 504
Target Start/End: Complemental strand, 18885136 - 18885065
Alignment:
Q  433 ttctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaat 504  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  18885136 ttctcttactctaaatcatcaatcaattctctaatgcatgagtgaattgctggaaccataaatctgtaaaat 18885065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 1781935 - 1781869
Alignment:
Q  409 cattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagt 475  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| ||| |||||||| |||||||    
T  1781935 cattaacaacataattatccctcattctcttactcaaaatcatccaccaattctctaattcatgagt 1781869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 35626278 - 35626172
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||     
T  35626278 aattttgttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgttggaaccataaatcta 35626179  T
Q  499 taaaata 505  Q
    |||||||    
T  35626178 taaaata 35626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 399 - 505
Target Start/End: Original strand, 10186677 - 10186783
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  10186677 aattttgttacattaacaacataattctccatcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 10186776  T
Q  499 taaaata 505  Q
    |||||||    
T  10186777 taaaata 10186783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 399 - 505
Target Start/End: Original strand, 17414634 - 17414740
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  17414634 aattttgttacattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 17414733  T
Q  499 taaaata 505  Q
     ||||||    
T  17414734 gaaaata 17414740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 43358859 - 43358755
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  43358859 aattttgttacattaacaacataattctccctcattctcttactctaaattatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 43358760  T
Q  499 taaaa 503  Q
    |||||    
T  43358759 taaaa 43358755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 511
Target Start/End: Original strand, 44524124 - 44524232
Alignment:
Q  403 ttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaa 502  Q
    ||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  44524124 ttgttgcattaacaacataattctccatcattctcttactttaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctgtaaa 44524223  T
Q  503 atagtgtta 511  Q
    ||| |||||    
T  44524224 atactgtta 44524232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 401 - 503
Target Start/End: Complemental strand, 19310928 - 19310826
Alignment:
Q  401 ttttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgta 500  Q
    ||||||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||    
T  19310928 ttttgttacattaacaatataattctccctcattctcttactataaatcatccatcaattctctaatgcatgaatgaattgctggaaccataaatctgta 19310829  T
Q  501 aaa 503  Q
    |||    
T  19310828 aaa 19310826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 1187933 - 1187822
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||| ||||||||||    
T  1187933 aattttgttacattaacaacataaatctcc-tcattctcttactctaaatcatccatcaattctttaatgcatgagtgaattggtagaaccataaatctg 1187835  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  1187834 taaaatattgtta 1187822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 3465579 - 3465467
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  3465579 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 3465480  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  3465479 taaaatactgtta 3465467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 3468173 - 3468061
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  3468173 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 3468074  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  3468073 taaaatactgtta 3468061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 28574403 - 28574291
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  28574403 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 28574304  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  28574303 taaaatactgtta 28574291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 28598415 - 28598303
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  28598415 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 28598316  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  28598315 taaaatactgtta 28598303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 13654443 - 13654329
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactct--aaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatc 496  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||  ||||||||||| || |||||||||||||||||||||| || || ||||||||    
T  13654443 aattttgttgcattaacaacataattctccctcattctcttgctctctaaatcatccattaattctctaatgcatgagtgaattgctgaaaccataaatc 13654344  T
Q  497 tgtaaaatagtgtta 511  Q
    ||||||||| |||||    
T  13654343 tgtaaaatactgtta 13654329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 21431770 - 21431865
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaa 494  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  21431770 aattttgttgcattaacaacataattctccctcattctcttaatctaaatcatccatcaattctctaatgcatcagtgaattgatggaaccataaa 21431865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 429 - 511
Target Start/End: Complemental strand, 16051282 - 16051200
Alignment:
Q  429 ctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    |||||| ||||||| ||||||||||||||| |||||||||||||||||||||| || || ||||||||||||||||| |||||    
T  16051282 ctcattttcttactttaaatcatccatcaattctctaatgcatgagtgaattgctgaaaccataaatctgtaaaatactgtta 16051200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 29681632 - 29681584
Alignment:
Q  463 ctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  29681632 ctaatgcattagtgaattgctggaaccataaatctgtaaaatattgtta 29681584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 48366213 - 48366260
Alignment:
Q  463 ctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtt 510  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||| ||||    
T  48366213 ctaatgcattagtgaattgctggaaccataaatctgtaaaatattgtt 48366260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 18670946 - 18670834
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  18670946 aattatgttgcattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaatgcatgagtgacttgttggaaccataaatctg 18670847  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  18670846 taaaatattgtta 18670834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 32429381 - 32429493
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    |||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  32429381 aattttgttggattaacaacataattctccctcattctcttactctaaatcatccatcaattctttaatgcatgagtgaattgttggaaccataaatctg 32429480  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  32429481 taaaatactgtta 32429493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 18737268 - 18737162
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||    
T  18737268 aattttgttgcattaacaacataattctccctcattctcttactctaaatcatccatcaattctctaattcatgagtgaattgctggaaccataaatctg 18737169  T
Q  499 taaaata 505  Q
    |||||||    
T  18737168 taaaata 18737162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 399 - 505
Target Start/End: Original strand, 34128335 - 34128441
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||    
T  34128335 aattttgttgcattaacatcataattctccctcattctcttactctaaatcatccatcaattttctaatgcatgagtgaattgttgaaaccataaatctg 34128434  T
Q  499 taaaata 505  Q
    |||||||    
T  34128435 taaaata 34128441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 18716595 - 18716489
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||||||| ||||| ||||||||||    
T  18716595 aattttgttgcattaacaacataattctcccccattctcttactctaaatcatccatcaattctctaatacaagagtgaattgctggaaccataaatctg 18716496  T
Q  499 taaaata 505  Q
    |||||||    
T  18716495 taaaata 18716489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 30019948 - 30020060
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||    
T  30019948 aattttgttacattaacaacataattcttcaccattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgttggaaccataaatatg 30020047  T
Q  499 taaaatagtgtta 511  Q
    | ||||| |||||    
T  30020048 tgaaatactgtta 30020060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 47071514 - 47071408
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||| ||| ||||||| ||    
T  47071514 aattttgttacattaacaacataattctccctcattctcttactctaaattatctatcaattctctaatgaatgagtgaattgtttgaaccataaatttg 47071415  T
Q  499 taaaata 505  Q
    |||||||    
T  47071414 taaaata 47071408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 34279589 - 34279701
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||||  || || ||||||||||    
T  34279589 aattttgttacattaacaacataattcttcctcgttctcttactctaaatcaaccatcaattctctaatgcatgagtgaattcctgaaaccataaatctg 34279688  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  34279689 taaaatactgtta 34279701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 35096134 - 35096022
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  35096134 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 35096035  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  35096034 taaaatactgtta 35096022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 54859255 - 54859367
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||  ||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||| |    
T  54859255 aattttgtcacattaacaacatgattctccctcattctcttgctctaaatcatccatcaattctctaatgcacgagtgaattgctggaaccataaatccg 54859354  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  54859355 taaaatactgtta 54859367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 14643828 - 14643940
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||| | |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||  |||||||| ||||| |||||||||     
T  14643828 aattttgttacatcaacaacataattcttcctaattctcttactctaaatcatccatcaattctctaatgtataggtgaattgctggaaccataaatctc 14643927  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  14643928 taaaatactgtta 14643940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 35091021 - 35090909
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||  |   ||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  35091021 aattttgttacattaacaacataattcatcaaaattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 35090922  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  35090921 taaaatactgtta 35090909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 424 - 511
Target Start/End: Original strand, 3424823 - 3424910
Alignment:
Q  424 tctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||| ||  ||||| ||||||||||||||||| |||||    
T  3424823 tctccctcattctcttactctaaatcatccattaattctctaatgcatgagtgagttactggaaacataaatctgtaaaatactgtta 3424910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 477
Target Start/End: Original strand, 34602060 - 34602121
Alignment:
Q  416 aacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtga 477  Q
    |||| |||||||||||||||| ||||||||||||||||||||| | ||| ||||||||||||    
T  34602060 aacacaattctccctcattcttttactctaaatcatccatcaattttcttatgcatgagtga 34602121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 480
Target Start/End: Original strand, 3409721 - 3409781
Alignment:
Q  424 tctccctcattctcttactctaaatcatccatc----aactctctaatgcatgagtgaatt 480  Q
    ||||||||||||||||||||||||||||||||     || |||||||||||||||||||||    
T  3409721 tctccctcattctcttactctaaatcatccatatattaattctctaatgcatgagtgaatt 3409781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 25618387 - 25618435
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaa 447  Q
    ||||||||| ||||| ||| |||||||||||||||||||||| ||||||    
T  25618387 aattttgttgcattaacaaaataattctccctcattctcttattctaaa 25618435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 14707702 - 14707572
Alignment:
Q  18 ttatcaacattttcaaaattgtataaataagcacacctcactagtctagcatatgataacaagttaatagcatctttgattttatttgtcaagaaagtcg 117  Q
    ||||||||||| ||||| ||||||||||||| |||| ||||||||||| ||||| |||||||||||||  |||||||||||||||||||| |  ||||      
T  14707702 ttatcaacattctcaaatttgtataaataagtacacatcactagtctatcatatcataacaagttaattacatctttgattttatttgtcgaacaagtta 14707603  T
Q  118 agttgaaatggaagcttctttgaagatggtg 148  Q
    |||||||||||||||||||||||||||||||    
T  14707602 agttgaaatggaagcttctttgaagatggtg 14707572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 399 - 505
Target Start/End: Original strand, 35368989 - 35369095
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||| |  ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||    
T  35368989 aattttgttgcatcaaaaacataattcttcctcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgttgtaaccataaatctg 35369088  T
Q  499 taaaata 505  Q
    |||||||    
T  35369089 taaaata 35369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 2023070 - 2022958
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  2023070 aattttgttacattaacaacataattcttcaccattctcttattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 2022971  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  2022970 taaaatactgtta 2022958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 395 - 511
Target Start/End: Complemental strand, 4555763 - 4555647
Alignment:
Q  395 acacaattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaa 494  Q
    ||||||||||||| ||||| |||||||||||| |  |||||| |||||||||||||||||| || ||||||||||||||||||||| |||| | ||||||    
T  4555763 acacaattttgttacattaacaacataattcttcaccattctattactctaaatcatccattaattctctaatgcatgagtgaattattggtaccataaa 4555664  T
Q  495 tctgtaaaatagtgtta 511  Q
    ||||||||||| |||||    
T  4555663 tctgtaaaataatgtta 4555647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 9877637 - 9877749
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  9877637 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 9877736  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  9877737 taaaatactgtta 9877749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 39903951 - 39903839
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  39903951 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 39903852  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  39903851 taaaatactgtta 39903839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 39909064 - 39908952
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  39909064 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 39908965  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  39908964 taaaatactgtta 39908952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 13556406 - 13556509
Alignment:
Q  402 tttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaa 501  Q
    |||||| ||||| |||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| |||||    
T  13556406 tttgttacattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatatgtaa 13556505  T
Q  502 aata 505  Q
    ||||    
T  13556506 aata 13556509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 9872522 - 9872634
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |   ||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  9872522 aattttgttacattaacaacataattcttcacaattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 9872621  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  9872622 taaaatactgtta 9872634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 399 - 470
Target Start/End: Original strand, 43540857 - 43540928
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgca 470  Q
    ||||||||| ||||| ||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  43540857 aattttgttacattaacaacatagttctccatcattctcttactctaaatcatctatcaattctctaatgca 43540928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 481
Target Start/End: Complemental strand, 25184166 - 25184116
Alignment:
Q  431 cattctcttactctaaatcatccatcaactctctaatgcatgagtgaattg 481  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  25184166 cattctcttactctaaatcatccatcaattctctaatgtattagtgaattg 25184116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 43378491 - 43378431
Alignment:
Q  451 tccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    |||||||| ||| |||||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  43378491 tccatcaattctttaatgcattagtgaattgctggaaccataaatctgtaaaatactgtta 43378431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 14707453 - 14707417
Alignment:
Q  193 attatatgaataaatgagaaattataatttcatcttc 229  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14707453 attatatgaataaatgagaaactataatttcatcttc 14707417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 14610470 - 14610358
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  14610470 aattttgttacattaacaacataattcttcatcattctcttattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 14610371  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  14610370 taaaatactgtta 14610358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 12851780 - 12851668
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  12851780 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 12851681  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  12851680 taaaatactgtta 12851668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 12856895 - 12856783
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  12856895 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 12856796  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  12856795 taaaatactgtta 12856783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 26051127 - 26051015
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  26051127 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 26051028  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  26051027 taaaatactgtta 26051015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 26056240 - 26056128
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  26056240 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 26056141  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  26056140 taaaatactgtta 26056128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 26060486 - 26060374
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  26060486 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 26060387  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  26060386 taaaatactgtta 26060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 26065599 - 26065487
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  26065599 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 26065500  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  26065499 taaaatactgtta 26065487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 4181480 - 4181591
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| | ||| |||||| | |    
T  4181480 aattttgttgcattaacaacataattctccctcattctcttaatctaaatcatccatcaattctctaatgcatgagtg-attgctcgaaccataaacccg 4181578  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  4181579 taaaatactgtta 4181591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 410 - 505
Target Start/End: Complemental strand, 11056720 - 11056625
Alignment:
Q  410 attaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaata 505  Q
    |||| ||||||||||||   ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||    
T  11056720 attaacaacataattctttatcattctcttactttaaatcatccatcaattctttaatgcatgagtgaattgttggaaccataaatctgtaaaata 11056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 5440396 - 5440492
Alignment:
Q  409 cattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaata 505  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| || ||||| ||||| ||||| |||| ||||||||||||    
T  5440396 cattaacaacataattctccctcattcccttactctaaatcatcgatcaattctctaaagcttgagtaaattgctggaaccatacatctgtaaaata 5440492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 409 - 505
Target Start/End: Original strand, 5449406 - 5449502
Alignment:
Q  409 cattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaata 505  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| || ||||| ||||| ||||| |||| ||||||||||||    
T  5449406 cattaacaacataattctccctcattcccttactctaaatcatcgatcaattctctaaagcttgagtaaattgctggaaccatacatctgtaaaata 5449502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 37459955 - 37460051
Alignment:
Q  415 caacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| || |||||| || || |||| |||||||||||| |||||    
T  37459955 caacataattctcccacattctcttactctaaatcatccatcaattctctgatgcattagcgaattgctgaaaccatatatctgtaaaatattgtta 37460051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 35352422 - 35352501
Alignment:
Q  432 attctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    ||||||||||| |||| |||||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||    
T  35352422 attctcttactataaaccatccatcaattctctaatgcatgagtgaattgctggaaccataaatctataaaatactgtta 35352501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 511
Target Start/End: Original strand, 5436692 - 5436740
Alignment:
Q  463 ctaatgcatgagtgaattgttggaatcataaatctgtaaaatagtgtta 511  Q
    ||||||||| ||||||||| | ||| ||||||||||||||||| |||||    
T  5436692 ctaatgcattagtgaattgcttgaaccataaatctgtaaaatattgtta 5436740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 18024246 - 18024358
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| |||  |||||||||    
T  18024246 aattttgttacattaacaacataattctccctcattctcttactctaaatcattcatcaattctctaatgcatgaatgaattgttagaacaataaatctg 18024345  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  18024346 taaaatattgtta 18024358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 402 - 511
Target Start/End: Complemental strand, 20891162 - 20891053
Alignment:
Q  402 tttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaa 501  Q
    |||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||    
T  20891162 tttgttacataaacaacataattctccctcattcgcttactctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctataa 20891063  T
Q  502 aatagtgtta 511  Q
    |||| |||||    
T  20891062 aatactgtta 20891053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 3187552 - 3187664
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| | ||| ||||||||||    
T  3187552 aattttgtgacattaacaacataattctccctcattctcttactctaaatcatctatcaattctttaatgcatgagtgaattgctcgaaccataaatctg 3187651  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  3187652 taaaatattgtta 3187664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 5458110 - 5458222
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  5458110 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 5458209  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  5458210 taaaatactgtta 5458222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 5481586 - 5481698
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  5481586 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 5481685  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  5481686 taaaatactgtta 5481698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 6858153 - 6858265
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  6858153 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 6858252  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  6858253 taaaatactgtta 6858265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 8458417 - 8458305
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  8458417 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 8458318  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  8458317 taaaatactgtta 8458305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 8464856 - 8464744
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  8464856 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 8464757  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  8464756 taaaatactgtta 8464744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 31081605 - 31081717
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  31081605 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgttggaaccataaatctg 31081704  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  31081705 taaaatactgtta 31081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 1302343 - 1302455
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  1302343 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 1302442  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  1302443 taaaatactgtta 1302455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 4049913 - 4049801
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  4049913 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 4049814  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  4049813 taaaatactgtta 4049801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 6853050 - 6853162
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| ||||||||||| |||||||||| ||||| ||||||||||    
T  6853050 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcacgagtgaattgctggaaccataaatctg 6853149  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  6853150 taaaatactgtta 6853162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 10591393 - 10591505
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||  | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  10591393 aattttgttacattaacaacataattcctcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 10591492  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  10591493 taaaatactgtta 10591505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 10673036 - 10673148
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  10673036 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 10673135  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  10673136 taaaatactgtta 10673148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 10678151 - 10678263
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  10678151 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 10678250  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  10678251 taaaatactgtta 10678263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 31076500 - 31076612
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  31076500 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 31076599  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  31076600 taaaatactgtta 31076612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 33703405 - 33703299
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  33703405 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 33703306  T
Q  499 taaaata 505  Q
    |||||||    
T  33703305 taaaata 33703299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 4055047 - 4054935
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||    
T  4055047 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctttaatgcatgagtgaattgctggaaccataaatctg 4054948  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  4054947 taaaatactgtta 4054935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 33702698 - 33702810
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||    
T  33702698 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatatg 33702797  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  33702798 taaaatactgtta 33702810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 49784602 - 49784490
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| ||||||||||| |||||||||| ||||| ||||||||| ||||| |||||||| ||||||||||||| ||||| ||||||||||    
T  49784602 aattttgttgcattaacaacataattccccctcattcttttactttaaatcatctatcaattctctaattcatgagtgaattgctggaaccataaatctg 49784503  T
Q  499 taaaatagtgtta 511  Q
     |||||| |||||    
T  49784502 gaaaatattgtta 49784490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 29827530 - 29827423
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| |||||  ||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||     |||||||||    
T  29827530 aattttgttgcattaataacctaattctccctcattctcttactctaaatcattcatcaattctctaatgcatgagtgaattgctg-----ataaatctg 29827436  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  29827435 taaaatactgtta 29827423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 399 - 505
Target Start/End: Original strand, 10584956 - 10585062
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||  | ||||||| ||| ||||||||||||||||| |||||||||||||||||||| | | ||| ||||||||||    
T  10584956 aattttgttacattaacaacataattcctcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaatagctagaaccataaatctg 10585055  T
Q  499 taaaata 505  Q
    |||||||    
T  10585056 taaaata 10585062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 34502765 - 34502697
Alignment:
Q  18 ttatcaacattttcaaaattgtataaataagcacacctcactagtctagcatatgataacaagttaata 86  Q
    ||||||||| ||||||| ||||||||||||| ||||  |||||||| ||||||| ||||||||||||||    
T  34502765 ttatcaacactttcaaatttgtataaataagtacacaccactagtcaagcatatcataacaagttaata 34502697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 27614176 - 27614109
Alignment:
Q  18 ttatcaacattttcaaaattgtataaataagcacacctcactagtctagcatatgataacaagttaata 86  Q
    ||||||||| ||||||| |||||||| |||| ||||  |||||||| ||||||| ||||||||||||||    
T  27614176 ttatcaacactttcaaatttgtataa-taagtacacaccactagtcaagcatatcataacaagttaata 27614109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 14917480 - 14917592
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  14917480 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 14917579  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  14917580 taaaatactgtta 14917592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 415 - 505
Target Start/End: Complemental strand, 716357 - 716267
Alignment:
Q  415 caacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctgtaaaata 505  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||    
T  716357 caacataattctccttcattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccctaaatctgtaaaata 716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 399 - 505
Target Start/End: Original strand, 30283539 - 30283645
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||| | ||| ||||||||||    
T  30283539 aattttgttacattaacaacataattctccatccttctcttactctaaatcatcaatcaattctctaatgcatgagtgaattgctagaaccataaatctg 30283638  T
Q  499 taaaata 505  Q
    |||||||    
T  30283639 taaaata 30283645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 17720624 - 17720736
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| |  |||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  17720624 aattttgttacattaacaacataattcttcaccattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 17720723  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  17720724 taaaatactgtta 17720736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 42780289 - 42780178
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| |||||| | ||||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||    
T  42780289 aattttgttacattacta-cataattcttcaccattctcttactctaaatcatccatcaattctctaatgcatgagtgaattgttggaaccataaatttg 42780191  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  42780190 taaaatactgtta 42780178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 45120492 - 45120380
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  45120492 aattttgttacattaacaacataattcttcatcattctattattctaaatcatccatcaattctccaatgcatgagtgaattgctggaaccataaatctg 45120393  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  45120392 taaaatactgtta 45120380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 16284544 - 16284437
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaa-tcatccatcaactctctaatgcatgagtgaattgttggaatcataaatct 497  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||||||     
T  16284544 aattttgttgcattaacaatataattctccctcattctcttactctaaaatcattcatcaactctctaatgcatgagtgaattgctgaaaccataaatca 16284445  T
Q  498 gtaaaata 505  Q
    ||||||||    
T  16284444 gtaaaata 16284437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 2117 - 2229
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    |||||| || ||||| |||||||||||| | ||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  2117 aattttattacattaacaacataattcttcatcattctattattctaaatcatccatcaattctctaatgcatgagtgaattgctggaaccataaatctg 2216  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  2217 taaaatactgtta 2229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 144204 - 144090
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactct--aaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatc 496  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||  ||||||||||| || |||||||||||||||||||||| || || ||||||||    
T  144204 aattttgttgcattaacaacataattctccctcattctcttgctctctaaatcatccattaattctctaatgcatgagtgaattgctgaaaccataaatc 144105  T
Q  497 tgtaaaatagtgtta 511  Q
    ||||||||| |||||    
T  144104 tgtaaaatactgtta 144090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 399 - 511
Target Start/End: Complemental strand, 173464 - 173352
Alignment:
Q  399 aattttgttccattaccaacataattctccctcattctcttactctaaatcatccatcaactctctaatgcatgagtgaattgttggaatcataaatctg 498  Q
    ||||||||| ||| | |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||  |||||||| ||||| |||||||||     
T  173464 aattttgttacatcaacaacataattcttcctaattctcttactctaaatcatccatcaattctctaatgtataggtgaattgctggaaccataaatctc 173365  T
Q  499 taaaatagtgtta 511  Q
    ||||||| |||||    
T  173364 taaaatactgtta 173352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University