View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7800_low_7 (Length: 452)
Name: NF7800_low_7
Description: NF7800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7800_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 177 - 437
Target Start/End: Complemental strand, 3900139 - 3899877
Alignment:
| Q |
177 |
ctcgaaccaactgtcccacaagattagcggtcacacttaataaagatattgaaaaatatagtgtacatggttttcttcatgatgatcataaccatgtctt |
276 |
Q |
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| T |
3900139 |
ctcgaaccaactgtcccacaagattagcggtcacacttaataaagatattgaaaaatatagtgtacatggttttcttcatgatgatcataaccatgtctt |
3900040 |
T |
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| Q |
277 |
gcat--tgaagagactattggaattttaatttgttcggagacgctagcaagtagtgactcttgcattttagagagtacttgccatgaaacctaccacatc |
374 |
Q |
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| T |
3900039 |
gcatcttgaggagactattggaattttaatttgttcggagacgctagcaagtagtgactcttgcattttagagagtacttgccatgaaacctaccacatc |
3899940 |
T |
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| Q |
375 |
gggtaatctatatgtagtgacgaaattatgttatctagatttgtattaaattgttataatact |
437 |
Q |
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| T |
3899939 |
gggtaatctacatgtagtgacgaaattatgttatctagatttgtattaatttgttataatact |
3899877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 3900233 - 3900129
Alignment:
| Q |
24 |
ttggagacataactacctgtagatttgtagtagtatgttgcaaggcaggtgtacgtaagaaggataagcgagataatttcacttgtaatcctagatttga |
123 |
Q |
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| T |
3900233 |
ttggagacataactacctgtagatttgtagta---tgttgcaaggaagg-----gtaagaaggataagcgagataatttcacttgtaaccctagacttga |
3900142 |
T |
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| Q |
124 |
aactcgaaccaac |
136 |
Q |
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| T |
3900141 |
aactcgaaccaac |
3900129 |
T |
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