View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7801_high_2 (Length: 700)
Name: NF7801_high_2
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7801_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 39485779 - 39485094
Alignment:
| Q |
1 |
tgatttattataccaacttttatttgttttacacaagtcagattcctttcttattcttgtgtgtcaatctaatctaattgattatgattgtatatcatta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39485779 |
tgatttattataccaacttttatttgttttacacaattcagattcctttcttattcttgtgtgtcaatctaatctaattgattatgattgtatatcatta |
39485680 |
T |
|
| Q |
101 |
acgtcgaatctaattcagcttcagattagattacatatgggttaacgggtaagcaccaaagtaatatttcaaggaaaccttcgagctacattgtccagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39485679 |
acgtcgaatctaattcagcttcagattagattacatatgggttaactggtaagcaccaaagtaatatttcaaggaaaccttcgagctacattgtccagag |
39485580 |
T |
|
| Q |
201 |
cagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcctctgacataaggaggatctcataaggtaatagttgatcccttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39485579 |
cagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcctctgacataaggaggatctcataaggtaatagttgatcccttt |
39485480 |
T |
|
| Q |
301 |
gtcaaatggtaaggttaattgtaaactgtgttttgatttaattatgcgtgctcctttgttttaatgttgtataccatgcttacctgcatttggcagtttc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39485479 |
gtcaaatggtaaggttaattgtaaactgtgttttgatttaattatgcgtgctcctttgttttaatgttgtataccatgcttacctgcatttggcagtttc |
39485380 |
T |
|
| Q |
401 |
atagaacattcatttaatttagttgaaatctttgagatattttgcttaatttaatttagtttcaacttatattgtattatgacctattatttctgtgtac |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39485379 |
atagaacattcatttaatttagttgaaatctttgagatattttgcttaatttaatttagtttcaacttatattgtattatgacttattatttctgtgtac |
39485280 |
T |
|
| Q |
501 |
tcggtgaacttgg-ccttctatattgtattaacttctactcaatggatgaaacttgtgcacactattcttannnnnnnnnnnnnngtgtgtatactcaat |
599 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39485279 |
tcggtgaacttggtccttctatattgtattaacttctactcaatggatgaaacttgtgcacactattcttatttttttaatttttgtgtgtatactcaat |
39485180 |
T |
|
| Q |
600 |
ttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtactgcttttcttaatgatccaaaaaact |
685 |
Q |
| |
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| T |
39485179 |
ttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtactgcttttcttaatgatccaaaaaact |
39485094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 461 - 684
Target Start/End: Complemental strand, 39477675 - 39477453
Alignment:
| Q |
461 |
ttcaacttatattgtattatgacctattatttctgtgtactcggtgaacttgg-ccttctatattgtattaacttctactcaatggatgaaacttgtgca |
559 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||| |
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| T |
39477675 |
ttcaacttttaatgtattatgacctattatttctgtgtactcggtgaacttggtccttctatattgtattaacttctaatcaacgaatgaaacttgtgca |
39477576 |
T |
|
| Q |
560 |
cactattcttannnnnnnnnnnnnngtgtgtatactcaatttggttaagaatgaaaatgtaacagcaccaaaaaagaagcagaatcaattttgtcagtac |
659 |
Q |
| |
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|| |||||||| || |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
39477575 |
cattattcttatttttaattttt--gtatgtataatcaatttggttaagaatgaaaatgtaacagcaacaaaaatgaagcagaatcaattttgtcagtac |
39477478 |
T |
|
| Q |
660 |
tgcttttcttaatgatccaaaaaac |
684 |
Q |
| |
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|||||||||||||||| |||||||| |
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| T |
39477477 |
tgcttttcttaatgattcaaaaaac |
39477453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39478579 - 39478301
Alignment:
| Q |
1 |
tgatttattataccaacttttatttgttttacacaagtcagattcctttcttattcttgtgtgtcaatctaatctaattgattatgattgtatatcatta |
100 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||| | |
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|
| T |
39478579 |
tgatttatcatatgaacttatatttgttttacacaagtcacattccattcttattcttgtgtgtcaatctaatctaattgataataattatatatcataa |
39478480 |
T |
|
| Q |
101 |
acgtcgaatctaattcagcttcagattagattacatatgggttaacgggtaagcaccaaagtaatatt---tcaaggaaaccttcgagctacattgtcca |
197 |
Q |
| |
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|| | |||| | || ||| || ||||||||||| | |||| |||||||||||| |||||| | |||||| ||||||||| |||||||||| |
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| T |
39478479 |
actttgaatttgatgcag------atgagattacatattg--taacaggtaagcaccaatgtaataataattcaaggttgccttcgagccacattgtcca |
39478388 |
T |
|
| Q |
198 |
gagcagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcctctgacataaggaggatctcataaggt |
284 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |
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| T |
39478387 |
gagcagtcgcaaaaggtgtcaacaatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggt |
39478301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39474607 - 39474328
Alignment:
| Q |
1 |
tgatttattataccaacttttatttgttttacacaagtcagattcctttcttattcttgtgtgtcaatctaatctaattgattatgattgtatatcatta |
100 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |||||||| | |
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| T |
39474607 |
tgatttatcatatgaacttgtatttgttttacacaagtcacattccattcttattcttgtgtgtcaatctaatctaattgataatagttatatatcataa |
39474508 |
T |
|
| Q |
101 |
acgtcgaatctaattcagcttcagattagattacatatgggttaacgggtaagcaccaaagtaatatttcaaggaaaccttcgagctacattg----tcc |
196 |
Q |
| |
|
|| | |||||| || ||| || ||||||||||| | |||| |||||||||||| |||||| |||||||| ||||| || ||||| ||| |
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| T |
39474507 |
actttgaatctgatgcag------atgagattacatattg--taacaggtaagcaccaatgtaataattcaaggatgccttcaggccacattcattatcc |
39474416 |
T |
|
| Q |
197 |
agagcagttggaaaaggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcctctgacataaggaggatctcataaggt |
284 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||| |
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|
| T |
39474415 |
agagcagtcgcaaaaggtgtcaacaatttccttaagcttctcagcttgagtaaccaaagcctctgacatgaggaggaactcatcaggt |
39474328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 563
Target Start/End: Original strand, 39456602 - 39456651
Alignment:
| Q |
514 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcacact |
563 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||||||||| |
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|
| T |
39456602 |
ccttctatattgtattaacttctagtcaatgaatgaagcttgtgcacact |
39456651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 39488616 - 39488567
Alignment:
| Q |
514 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcacact |
563 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |||||||||||| |
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|
| T |
39488616 |
ccttctatattgtattaatttctactcaatgaatgaagcttgtgcacact |
39488567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 561
Target Start/End: Original strand, 39452464 - 39452511
Alignment:
| Q |
514 |
ccttctatattgtattaacttctactcaatggatgaaacttgtgcaca |
561 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||| |||||||||| |
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|
| T |
39452464 |
ccttatatattgtaataacttctactcaatgaatgaagcttgtgcaca |
39452511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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