View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7801_high_3 (Length: 648)

Name: NF7801_high_3
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7801_high_3
NF7801_high_3
[»] chr7 (5 HSPs)
chr7 (257-422)||(41713915-41714078)
chr7 (105-226)||(41714108-41714229)
chr7 (166-224)||(14676352-14676410)
chr7 (166-224)||(45510464-45510522)
chr7 (168-224)||(38138055-38138111)
[»] chr3 (8 HSPs)
chr3 (166-224)||(1132836-1132894)
chr3 (166-227)||(31651343-31651404)
chr3 (168-224)||(3333988-3334044)
chr3 (166-224)||(30697493-30697551)
chr3 (166-224)||(32720983-32721041)
chr3 (182-224)||(53620359-53620401)
chr3 (166-223)||(2984013-2984070)
chr3 (168-220)||(50201692-50201744)
[»] chr4 (3 HSPs)
chr4 (166-227)||(28880113-28880174)
chr4 (166-226)||(8159389-8159449)
chr4 (172-224)||(25056540-25056592)
[»] chr5 (2 HSPs)
chr5 (170-222)||(15917518-15917570)
chr5 (181-224)||(31632971-31633014)
[»] scaffold1763 (1 HSPs)
scaffold1763 (166-224)||(505-563)
[»] chr8 (2 HSPs)
chr8 (166-224)||(3394083-3394141)
chr8 (181-224)||(13258623-13258666)
[»] chr2 (4 HSPs)
chr2 (181-224)||(33206924-33206967)
chr2 (166-224)||(36030915-36030973)
chr2 (178-219)||(13110470-13110511)
chr2 (166-222)||(12941700-12941756)
[»] chr1 (3 HSPs)
chr1 (168-218)||(40136131-40136181)
chr1 (166-224)||(50097736-50097794)
chr1 (166-224)||(52073359-52073417)
[»] chr6 (2 HSPs)
chr6 (166-227)||(8439294-8439354)
chr6 (170-227)||(16329505-16329562)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 257 - 422
Target Start/End: Complemental strand, 41714078 - 41713915
Alignment:
Q  257 catctcataaagtcttcctttcccattccctgtagtaacatatgttaacagataagacatgcaatacaggggtccagttatgcnnnnnnnnnnncatttg 356  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||           ||||||    
T  41714078 catctcataaagtcttcctttcccattccctatattaacatatgttaacaaataagacatgcaatacaggg-tccagttatgcaaaaaaaaaa-catttg 41713981  T
Q  357 caaagagtttccctttgcctcaaatatgtttcacgggctaaaacacaaaagtaaataacatcactt 422  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  41713980 caaagagtttccctttgcctcaaatatgtttcacgggccgaaacacaaaagtaaataacatcactt 41713915  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 41714229 - 41714108
Alignment:
Q  105 tatgaagttatgttaaaggacaaccaatgtaattttgcctaatattcttaaaatnnnnnnntatattaaccattaacattaatttaacattctctgcaaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||    
T  41714229 tatgaagttatgttaaaggacaaccaatgtaattttgcctaatattcttaaaataaaaaaatatattaaccattaacattaatttaacattctctacaaa 41714130  T
Q  205 aatactctttcaaaaaatgtaa 226  Q
    |||||||||| |||||||||||    
T  41714129 aatactcttttaaaaaatgtaa 41714108  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 14676352 - 14676410
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||||||| | |||||||||| ||||| ||  |||| ||||||||||||||||||    
T  14676352 tatattaaccataagcattaatttatcattccctaaaaaattactctttcaaaaaatgt 14676410  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 45510464 - 45510522
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| |||||||||||| ||||||||  |||| |||||||||| |||||||    
T  45510464 tatattaatcataaacattaatttatcattctctaaaaaattactctttcacaaaatgt 45510522  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 38138055 - 38138111
Alignment:
Q  168 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||| ||| | |||||||||| ||||||||  ||||||||||| |||||||||||    
T  38138055 tattaatcataagcattaatttatcattctctaaaaaaatactctatcaaaaaatgt 38138111  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 1132894 - 1132836
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||||||| |||||||||||| ||||||||  |||| ||||||||||||||||||    
T  1132894 tatattaaccatgaacattaatttatcattctctaaaaaattactctttcaaaaaatgt 1132836  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 31651404 - 31651343
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 227  Q
    |||||||| ||| | |||||||||||||||||||  |||| |||||||||||||||| ||||    
T  31651404 tatattaatcataagcattaatttaacattctctaaaaaattactctttcaaaaaatctaaa 31651343  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 3333988 - 3334044
Alignment:
Q  168 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||| ||| |||||||||||| ||||||||  |||||||||||| ||||||||||    
T  3333988 tattaatcataaacattaatttatcattctctaaaaaaatactcttccaaaaaatgt 3334044  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 30697493 - 30697551
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| ||||||| |||| ||||||||  ||||||| |||||||||||||||    
T  30697493 tatattaatcataaacattagtttatcattctctaaaaaaataatctttcaaaaaatgt 30697551  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 32721041 - 32720983
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| | |||||||||| || ||||| ||||||||||||||||| ||||||    
T  32721041 tatattaatcataagcattaatttatcactctctacaaaaatactctttcaataaatgt 32720983  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 53620359 - 53620401
Alignment:
Q  182 attaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    ||||||||| ||||||||  |||||||||||||||||||||||    
T  53620359 attaatttatcattctctaaaaaaatactctttcaaaaaatgt 53620401  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 2984013 - 2984070
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatg 223  Q
    |||||||| ||||| ||||||| || ||||||||  |||| |||||||||||||||||    
T  2984013 tatattaatcattagcattaatgtatcattctctaaaaaattactctttcaaaaaatg 2984070  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 50201692 - 50201744
Alignment:
Q  168 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaa 220  Q
    |||||| ||| | |||||||||| ||||||||  |||||||||||||||||||    
T  50201692 tattaatcataagcattaatttaccattctctaaaaaaatactctttcaaaaa 50201744  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 28880113 - 28880174
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 227  Q
    |||||||| ||| |||||||||||| || |||||  ||||||||||||||||||||||||||    
T  28880113 tatattaatcataaacattaatttatcactctctaaaaaaatactctttcaaaaaatgtaaa 28880174  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 8159389 - 8159449
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaa 226  Q
    |||||| ||||| |||| ||||||| |||| |||  ||||||||| |||||||||||||||    
T  8159389 tatatttaccataaacaataatttatcattttctagaaaaatactttttcaaaaaatgtaa 8159449  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 25056592 - 25056540
Alignment:
Q  172 aaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||| |||||||||||| |||| |||| |||| |||||||| |||||||||    
T  25056592 aaccataaacattaatttatcattatctgaaaaattactcttttaaaaaatgt 25056540  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 15917518 - 15917570
Alignment:
Q  170 ttaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaat 222  Q
    |||||||| |||||||||||| || ||||| ||||||||||||||||||||||    
T  15917518 ttaaccataaacattaatttatcactctctacaaaaatactctttcaaaaaat 15917570  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 31632971 - 31633014
Alignment:
Q  181 cattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||    
T  31632971 cattcatttatcattctctacaaaaatactctttcaaaaaatgt 31633014  T

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Target: scaffold1763 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 563 - 505
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| |||||||||||||||||||||  |||  ||||||||||||||||||    
T  563 tatattaatcataaacattaatttaacattctctaaaaatttactctttcaaaaaatgt 505  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 3394083 - 3394141
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| |||||||||||| ||||||||  |||| ||||||||||||||||||    
T  3394083 tatattaatcataaacattaatttatcattctcttaaaaattactctttcaaaaaatgt 3394141  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 13258623 - 13258666
Alignment:
Q  181 cattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||||| ||||||||  |||||||||||||||||||||||    
T  13258623 cattaatttatcattctctaaaaaaatactctttcaaaaaatgt 13258666  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 33206924 - 33206967
Alignment:
Q  181 cattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||||||||||||||  ||||| |||||||||||||||||    
T  33206924 cattaatttaacattctctaaaaaaacactctttcaaaaaatgt 33206967  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 36030915 - 36030973
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| | |||||||||| ||||||||  |||||||||||||| ||||||||    
T  36030915 tatattaatcataagcattaatttatcattctctaaaaaaatactctttccaaaaatgt 36030973  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 13110470 - 13110511
Alignment:
Q  178 taacattaatttaacattctctgcaaaaatactctttcaaaa 219  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||    
T  13110470 taacatttatttatcattctctgcaaaaatactctatcaaaa 13110511  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 12941756 - 12941700
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaat 222  Q
    |||||||||||| ||| |||||||| || |||||| ||||||| | |||||||||||    
T  12941756 tatattaaccataaacgttaatttatcactctctgaaaaaatattttttcaaaaaat 12941700  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 40136181 - 40136131
Alignment:
Q  168 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaa 218  Q
    |||||| ||| |||||||||||| |||||||| |||||||||||| |||||    
T  40136181 tattaatcataaacattaatttatcattctctacaaaaatactctctcaaa 40136131  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 50097736 - 50097794
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| |||| ||||||| || |||||  |||||||||||||||||||||||    
T  50097736 tatattaatcataaacaataatttatcactctctaaaaaaatactctttcaaaaaatgt 50097794  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 52073417 - 52073359
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 224  Q
    |||||||| ||| ||| |||||||| ||||||||  |||| ||||||||||||||||||    
T  52073417 tatattaatcataaacgttaatttatcattctctaaaaaattactctttcaaaaaatgt 52073359  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 8439354 - 8439294
Alignment:
Q  166 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 227  Q
    |||||||| ||| |||||||||||| ||||||||  ||||||||| ||||||||||| ||||    
T  8439354 tatattaatcataaacattaatttatcattctct-aaaaaatactttttcaaaaaatataaa 8439294  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 16329505 - 16329562
Alignment:
Q  170 ttaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 227  Q
    |||| ||||| |||||||||| ||||||||  |||| || ||||||||||||||||||    
T  16329505 ttaatcattagcattaatttatcattctctaaaaaattattctttcaaaaaatgtaaa 16329562  T

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