View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7801_high_5 (Length: 458)
Name: NF7801_high_5
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7801_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 779773 - 780222
Alignment:
| Q |
16 |
attataacatgagttttgatactaattcttgagctgagaatgttagttgtttattaatttcatggnnnnnnn-attgtaatggagagtcatagtcaatag |
114 |
Q |
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| T |
779773 |
attataacatgagttttgatactaattcttgagctgagaatgttagttgtttattaatttcatggtttgttttattgtaatggagagtcatagtcaatag |
779872 |
T |
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| Q |
115 |
gataatgatctatgaaacaccgttacggacttaagacacgtaaaaattaataagcgaatgagtttattgaacttatcacatttaatttgtccgacacatg |
214 |
Q |
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| T |
779873 |
gataatgatctatgaaacactgttacggacttaagacacgtaaaaattaataagcgaatgagtttattgaacttatcacagtt-----gtccgacacatg |
779967 |
T |
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| Q |
215 |
ttagacatcatagacgtcatctatcataagtgtatgtgctataaagctaatgacctagacaatccatcaacaaacagtgacgaagctggttggaaaccgt |
314 |
Q |
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| T |
779968 |
ttagacatcatagacgtcatctatcataagtgtatgtgctataaagctaatgacctagacaatccatcaacaaacagcgacgaagctggttggaaaccgt |
780067 |
T |
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| Q |
315 |
t-------taggaatcaatttgattgtgcgtgatggaatcaattttgtgttttatatcacttaactattcat----tactggaatagtaacaaataacac |
403 |
Q |
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| T |
780068 |
ttaaatactaggaatcaatttgattgtgcatgatggaatcaattttgtgttttatatcacttaactattcattagctactggaatagtaacaaataacac |
780167 |
T |
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| Q |
404 |
taaatggttatcaactttactattttaaggnnnnnnnacacctttgttctttata |
458 |
Q |
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| T |
780168 |
taaatggttatcaactttactattttaaggtttttttacacctttgttctttata |
780222 |
T |
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