View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7801_high_6 (Length: 376)
Name: NF7801_high_6
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7801_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 51 - 359
Target Start/End: Original strand, 7369045 - 7369360
Alignment:
| Q |
51 |
gccactatttaagtgactacttggactatatatagttggtccttgatataatgtaatcactgatgcaccaattacacaaaatattgttcctgctactttt |
150 |
Q |
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| T |
7369045 |
gccactatttaagtgactacttggactatatatagttggtccttgatataatgtaatcactgatgcaccaattacacaaaatattgttcctgctactttt |
7369144 |
T |
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| Q |
151 |
gcaattccatcttttctattcagtcttacttgctctatcctgttgattaaattttgcatatgaannnnnnnggttagcattacttaatgtgtcacataat |
250 |
Q |
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| T |
7369145 |
gcaattccatcttttctattcagtcttacttgctctatcctgttgattaaattttgcatattaatttttttggttagcattacttaatgtgtcacataat |
7369244 |
T |
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| Q |
251 |
atata-tatagttt----aat--tatgaannnnnnnacttgccttagtatgactgccatgagaaatgtaatggcagggacagaattctgtattgctgatg |
343 |
Q |
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| T |
7369245 |
atatagtttaatttgtcaaataatatgaatttttttacttgccttagtatgactgccatgagaaatgtaatggcagggacagaattctgtattgctgatg |
7369344 |
T |
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| Q |
344 |
caaaggtaggggatgt |
359 |
Q |
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| T |
7369345 |
caaaggtaggggatgt |
7369360 |
T |
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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 52730436 - 52730506
Alignment:
| Q |
289 |
agtatgactgccatgagaaatgtaatggcagggacagaattctgtattgctgatgcaaaggtaggggatgt |
359 |
Q |
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| T |
52730436 |
agtatgactgccatgacaaatgtaatggctggtacagaattctgtatagctgatgcaaaggttggagatgt |
52730506 |
T |
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