View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7801_high_8 (Length: 293)

Name: NF7801_high_8
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7801_high_8
NF7801_high_8
[»] chr5 (7 HSPs)
chr5 (10-275)||(11905997-11906262)
chr5 (10-46)||(6243232-6243268)
chr5 (17-52)||(26716275-26716310)
chr5 (17-52)||(26986015-26986050)
chr5 (17-52)||(30918380-30918415)
chr5 (11-45)||(5612517-5612551)
chr5 (17-46)||(27938171-27938200)
[»] chr2 (3 HSPs)
chr2 (10-52)||(4355327-4355369)
chr2 (17-57)||(3563848-3563888)
chr2 (17-46)||(14217235-14217264)
[»] chr8 (4 HSPs)
chr8 (10-46)||(27886198-27886234)
chr8 (10-46)||(27944856-27944892)
chr8 (23-52)||(32759375-32759404)
chr8 (8-52)||(28737257-28737301)
[»] chr3 (7 HSPs)
chr3 (17-52)||(2122706-2122741)
chr3 (17-52)||(22289802-22289837)
chr3 (11-46)||(41742147-41742182)
chr3 (11-45)||(21157804-21157838)
chr3 (10-52)||(42464981-42465023)
chr3 (126-192)||(52027661-52027727)
chr3 (23-52)||(47642019-47642048)
[»] chr7 (1 HSPs)
chr7 (10-52)||(38262998-38263040)
[»] chr1 (4 HSPs)
chr1 (22-52)||(10822404-10822434)
chr1 (17-46)||(34432464-34432493)
chr1 (10-46)||(3708353-3708389)
chr1 (22-54)||(29167947-29167979)
[»] chr6 (1 HSPs)
chr6 (15-52)||(3212479-3212516)
[»] chr4 (1 HSPs)
chr4 (10-46)||(42472643-42472679)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 11906262 - 11905997
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatata 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11906262 gcagggaatacaatacgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatata 11906163  T
Q  110 tgaaagaaatatagaggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11906162 tgaaagaaatatagaggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtt 11906063  T
Q  210 tttaattaaggaaacattatttgaggaactgattggtggctgagtgtatgttttgcagtcatatag 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11906062 tttaattaaggaaacattatttgaggaactgattggtggctgagtgtatgttttgcagtcatatag 11905997  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 6243232 - 6243268
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcg 46  Q
    |||||| ||||||||||||||||||||||||||||||    
T  6243232 gcagaggatacaatacgtcatccattttgaagtatcg 6243268  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 26716310 - 26716275
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||| |||||||||||||||||||||||||||||||    
T  26716310 atacgatacgtcatccattttgaagtatcgaggctt 26716275  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 26986050 - 26986015
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||| |||||||||||||||||||||||||||||||    
T  26986050 atacgatacgtcatccattttgaagtatcgaggctt 26986015  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 30918415 - 30918380
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||||||||||||||||||||||||||||| |||||    
T  30918415 atacaatacgtcatccattttgaagtatcggggctt 30918380  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 5612517 - 5612551
Alignment:
Q  11 cagagaatacaatacgtcatccattttgaagtatc 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  5612517 cagagaatacgatacgtcatccattttgaagtatc 5612551  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 27938200 - 27938171
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcg 46  Q
    ||||||||||||||||||||||||||||||    
T  27938200 atacaatacgtcatccattttgaagtatcg 27938171  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 4355369 - 4355327
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  4355369 gcagggaatacgatacgtcatccattttgaagtatcgaggctt 4355327  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 3563888 - 3563848
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcgaggctttagat 57  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  3563888 atacaatacgtcatccattttgaagtatcggggcttcagat 3563848  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 14217235 - 14217264
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcg 46  Q
    ||||||||||||||||||||||||||||||    
T  14217235 atacaatacgtcatccattttgaagtatcg 14217264  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 27886234 - 27886198
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcg 46  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27886234 gcagggaatacaatacgtcatccattttgaagtatcg 27886198  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 27944892 - 27944856
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcg 46  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27944892 gcagggaatacaatacgtcatccattttgaagtatcg 27944856  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 32759404 - 32759375
Alignment:
Q  23 tacgtcatccattttgaagtatcgaggctt 52  Q
    ||||||||||||||||||||||||||||||    
T  32759404 tacgtcatccattttgaagtatcgaggctt 32759375  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 28737301 - 28737257
Alignment:
Q  8 tagcagagaatacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||||| | |||||||||||||||||||||||| ||||| |||||    
T  28737301 tagcaggggatacaatacgtcatccattttgaaatatcggggctt 28737257  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 2122741 - 2122706
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||||||||||||||||||||||||||||| |||||    
T  2122741 atacaatacgtcatccattttgaagtatcggggctt 2122706  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 22289802 - 22289837
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||| |||||||||||||||||||||||||||||||    
T  22289802 atacgatacgtcatccattttgaagtatcgaggctt 22289837  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 41742147 - 41742182
Alignment:
Q  11 cagagaatacaatacgtcatccattttgaagtatcg 46  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41742147 cagaggatacaatacgtcatccattttgaagtatcg 41742182  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 21157804 - 21157838
Alignment:
Q  11 cagagaatacaatacgtcatccattttgaagtatc 45  Q
    |||||||||| ||||||||||||||||||||||||    
T  21157804 cagagaatacgatacgtcatccattttgaagtatc 21157838  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 42464981 - 42465023
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||||| ||||| |||||||||||||||||||||||| |||||    
T  42464981 gcagaggatacagtacgtcatccattttgaagtatcggggctt 42465023  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 52027727 - 52027661
Alignment:
Q  126 gaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaatta 192  Q
    ||||||| ||||||||||||||||||||  ||| ||   |||||| ||||||||||||| |||||||    
T  52027727 gaaataagtgttgattattttgaaagtaccaaaatattcttgaataataaaaattccatcaaaatta 52027661  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 47642048 - 47642019
Alignment:
Q  23 tacgtcatccattttgaagtatcgaggctt 52  Q
    ||||||||||||||||||||||||||||||    
T  47642048 tacgtcatccattttgaagtatcgaggctt 47642019  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 38263040 - 38262998
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  38263040 gcagagaatacggtacgtcatccattttgaagtatcggggctt 38262998  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 52
Target Start/End: Complemental strand, 10822434 - 10822404
Alignment:
Q  22 atacgtcatccattttgaagtatcgaggctt 52  Q
    |||||||||||||||||||||||||||||||    
T  10822434 atacgtcatccattttgaagtatcgaggctt 10822404  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 34432464 - 34432493
Alignment:
Q  17 atacaatacgtcatccattttgaagtatcg 46  Q
    ||||||||||||||||||||||||||||||    
T  34432464 atacaatacgtcatccattttgaagtatcg 34432493  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 3708353 - 3708389
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcg 46  Q
    |||||| |||| |||||||||||||||||||||||||    
T  3708353 gcagaggatacgatacgtcatccattttgaagtatcg 3708389  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 29167979 - 29167947
Alignment:
Q  22 atacgtcatccattttgaagtatcgaggcttta 54  Q
    ||||||||||||||||||||||| |||||||||    
T  29167979 atacgtcatccattttgaagtatggaggcttta 29167947  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 3212516 - 3212479
Alignment:
Q  15 gaatacaatacgtcatccattttgaagtatcgaggctt 52  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  3212516 gaatacgatacgtcatccattttgaagtatcggggctt 3212479  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 42472643 - 42472679
Alignment:
Q  10 gcagagaatacaatacgtcatccattttgaagtatcg 46  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  42472643 gcagggaatacagtacgtcatccattttgaagtatcg 42472679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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