View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7801_high_9 (Length: 291)
Name: NF7801_high_9
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7801_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 44944348 - 44944482
Alignment:
| Q |
13 |
aatatagcaattgaattaatggaagaagaagaaaaaagacagacaatgttgcacaaaattagatcctaaaaaggccaaatatatatgttggtagaacaaa |
112 |
Q |
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| T |
44944348 |
aatatagcaattgaattaatggaagaagaagaaaaaagacagacaatgttgcacaaaattagatcctaaaaaggccaa----atatgttggtagaacaaa |
44944443 |
T |
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| Q |
113 |
caatagctatgttctaaggaaatcaattaacacaactaa |
151 |
Q |
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| T |
44944444 |
caataactatgttctaaggaaatcaattaacacaactaa |
44944482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 44946005 - 44946089
Alignment:
| Q |
13 |
aatatagcaattgaattaatggaagaag-aagaaaa--aagacagacaatgttgcacaaaattagatcctaaaaaggccaaatat |
94 |
Q |
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| T |
44946005 |
aatatagcaattgaattaatggaaaaaggaataaaataaatacagacaatgttgcacaaaattagagcataaaaagaccaaatat |
44946089 |
T |
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