View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7801_low_1 (Length: 768)
Name: NF7801_low_1
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7801_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 619; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 105 - 754
Target Start/End: Complemental strand, 36136791 - 36136144
Alignment:
| Q |
105 |
tggatatgatcagggctgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccc |
204 |
Q |
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| T |
36136791 |
tggatatgatcagggctgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccc |
36136692 |
T |
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| Q |
205 |
tcttagagaaccaatcacaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36136691 |
tcttagagaaccaatcacaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaatag |
36136592 |
T |
|
| Q |
305 |
ttagttacaaatataattgaatcaatgtcatatggcacactggccacaaagaaataaccatatagatacctggttgctcatttttccgtctgtaatgatt |
404 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36136591 |
ttagttacaaatataactgaatcaatgtcatatggcacactggccacaaagaaataaccatatagatacctggttgctcatttttccgtctgtaatgatt |
36136492 |
T |
|
| Q |
405 |
ttgaccacagctggaaaacctttccctagaaaattgaatacagaagcaacaagaataggtcggtccactttctcattttgagacagaagtattgtaatgt |
504 |
Q |
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| T |
36136491 |
ttgaccacagctggaaaacctttccctagaaaattgaatacagaaacaacaagaataggtcggtccactttctc--tttgagacagaagtattgtaatgt |
36136394 |
T |
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| Q |
505 |
tgagttggagattcactgtatataggagaagatttgctgatacagaagtattgcaatgttgagttaggcatctaaaatttgcaatagtttggatccactg |
604 |
Q |
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| T |
36136393 |
tgagttggagattcactgtatataggagaagatttgctgatacagaagtattgcaatgttgagttaggcatctaaaatttgcaatagtttggatccactg |
36136294 |
T |
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| Q |
605 |
atatattattcagcataatttggagttacttatacttggagattttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaagcaa |
704 |
Q |
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| T |
36136293 |
atatattattcagcataatttggagttacttatgcttggagattttgtttatcaaaattacattaatgggagaaaatacatttattaatttatcaaacaa |
36136194 |
T |
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| Q |
705 |
aatatcacactcaaaagtggaaaaatatcattgctcttaagaatatactg |
754 |
Q |
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| T |
36136193 |
aatatcacactcaaaagtggaaaaatatcattgctcttaagaatatactg |
36136144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 36136879 - 36136845
Alignment:
| Q |
17 |
aatataaaggtatgttaaataagcactatagtggt |
51 |
Q |
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| T |
36136879 |
aatataaaggtatgttaaataagcactatagtggt |
36136845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 121 - 325
Target Start/End: Complemental strand, 41339643 - 41339447
Alignment:
| Q |
121 |
tgatctcgagaattgtctgaattttcctgctcattaacagaactacttgagccttcaacttgatgtgatgcttcttctttaccctcttagagaaccaatc |
220 |
Q |
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| T |
41339643 |
tgatctggagaattgtccgaattttcttgctcattaacagaactacttgagccttcaacttgacgtgatgcttcttctttaccctctaagagaaccaagc |
41339544 |
T |
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| Q |
221 |
acaagcaaaaacacttattaagttattataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataattagttacaaatataa |
320 |
Q |
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| T |
41339543 |
acaagcaaaggcac--------ttattataatccatagttttatatttataatgatatcctcatgaaaagttatagagaaatagtttgttacaaatctaa |
41339452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 571 - 668
Target Start/End: Complemental strand, 41337843 - 41337746
Alignment:
| Q |
571 |
ggcatctaaaatttgcaatagtttggatccactgatatattattcagcataatttggagttacttatacttggagattttgtttatcaaaattacatt |
668 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
41337843 |
ggcatccaaaatttgcaattgtttggatccactgatatattatttagcataatttggagttatgtatacttagagattttgttcatcaaaattacatt |
41337746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 41339449 - 41339373
Alignment:
| Q |
355 |
gaaataaccatatagatacctggttgctcatttttccgtctgtaatgattttgaccacagctggaaaacctttccct |
431 |
Q |
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| T |
41339449 |
gaaataaccatttagatacctggttgctcatttttccatctgcaatgatttcgaccacggctggaaaacctttccct |
41339373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 707 - 754
Target Start/End: Complemental strand, 41337737 - 41337690
Alignment:
| Q |
707 |
tatcacactcaaaagtggaaaaatatcattgctcttaagaatatactg |
754 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41337737 |
tatcacactcaaaagtggaaaaatatcaatgctcttaagaatatactg |
41337690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 247 - 427
Target Start/End: Complemental strand, 22630048 - 22629871
Alignment:
| Q |
247 |
tataatcaacagttatatatttataatgatatccgcatcaaaagttaaagaaaaataattagttacaaatataattgaatcaatgtcatatggcacactg |
346 |
Q |
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||||||||| |||||||||||||||||||||||| || |||| || ||| ||| | |||||||||||| ||| ||||||||||||||||| |||| || |
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| T |
22630048 |
tataatcaatagttatatatttataatgatatccttatgaaaaatttaagtgaaaaagttagttacaaatctaactgaatcaatgtcatatgacacattg |
22629949 |
T |
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| Q |
347 |
gccacaaagaaataaccatatagatacctggttgctcatttttccgtctgtaatgattttgaccacagctggaaaaccttt |
427 |
Q |
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| T |
22629948 |
gccacaaagaaagagccatatagatacacggtttctaattt---cttctgtaatgatttcgaccaaggctggaaaaccttt |
22629871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 22630092 - 22630255
Alignment:
| Q |
261 |
atatatttataatgatatccgcatcaaaa-gttaaagaaaaataattagttacaaatataattgaatcaatgtcatatggcacactggccacaaagaaat |
359 |
Q |
| |
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|||||||||||||||||||| |||||||| | ||||| ||| | |||||||||||| ||| ||| ||||||||||||| || |||| ||||| ||||| |
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| T |
22630092 |
atatatttataatgatatcctcatcaaaaaggtaaagtgaaaaatttagttacaaatctaaatgattcaatgtcatatgacaaactgaccacagagaaag |
22630191 |
T |
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| Q |
360 |
aaccatatagatacctggttgctcatttttccgtctgtaatgattttgaccacagctggaaaacctt |
426 |
Q |
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| T |
22630192 |
agccatatagatacatggcttctcatttt---atctctaatgatttcgaccatggctggaaaacctt |
22630255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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