View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7801_low_11 (Length: 349)
Name: NF7801_low_11
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7801_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 6908443 - 6908287
Alignment:
| Q |
22 |
ttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatg |
121 |
Q |
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| T |
6908443 |
ttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatg |
6908344 |
T |
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| Q |
122 |
cttcattgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag |
178 |
Q |
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| T |
6908343 |
cttcattgattgaagcatagttgattttgaatattagtttgattatgtgtgtaagag |
6908287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 230 - 333
Target Start/End: Complemental strand, 6908223 - 6908120
Alignment:
| Q |
230 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggattaatggagactttatcattt |
329 |
Q |
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| T |
6908223 |
aggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggattaatggagactttatcattt |
6908124 |
T |
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| Q |
330 |
tcat |
333 |
Q |
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|||| |
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| T |
6908123 |
tcat |
6908120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 44924416 - 44924311
Alignment:
| Q |
22 |
ttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatg |
121 |
Q |
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| T |
44924416 |
ttacttgatgctgcgtgtaagagaatattatttagctgtttgatattgcttattttgatggtatacctgtgtatccaaccgaaactttgatccaactatg |
44924317 |
T |
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| Q |
122 |
cttcat |
127 |
Q |
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|||||| |
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| T |
44924316 |
cttcat |
44924311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 6901782 - 6901855
Alignment:
| Q |
22 |
ttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtat |
95 |
Q |
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|||| ||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||| |
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| T |
6901782 |
ttacctgatggtgtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtatatccgtgtat |
6901855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 6908253 - 6908225
Alignment:
| Q |
212 |
ttgattctaaattaaggaaggaaatatgt |
240 |
Q |
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| T |
6908253 |
ttgattctaaattaaggaaggaaatatgt |
6908225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 202544 - 202700
Alignment:
| Q |
22 |
ttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgatccaactatg |
121 |
Q |
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| T |
202544 |
ttacttgatgctctgtgtaagagaatattatttagctgtttgatattgcttgttttgatggtatacccgtgtatccaaccgaaactttgatccaactatg |
202643 |
T |
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| Q |
122 |
cttcattgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag |
178 |
Q |
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| T |
202644 |
cttcattgattgaagcatagttgattttgaatattagtttgattctgtgtgtaagag |
202700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 212 - 333
Target Start/End: Original strand, 202737 - 202858
Alignment:
| Q |
212 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaatgttgtaaaatttgattttgaatctttcattgattgagcttgtgttttggatta |
311 |
Q |
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| T |
202737 |
ttgattctaaattaaggaaggaaatatgtttgattctaaattctaaagttgtaaaatttgattttgaatctttcattgattgagcctgtgttttggatta |
202836 |
T |
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| Q |
312 |
atggagactttatcattttcat |
333 |
Q |
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|||||||||||||||||||||| |
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| T |
202837 |
atggagactttatcattttcat |
202858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 206555 - 206482
Alignment:
| Q |
22 |
ttacttgatgctgtgtgtaagagaatattatttagctgtttgatattgcttgtttttatggtatacccgtgtat |
95 |
Q |
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| T |
206555 |
ttacttgatggtgtgtgtaagagaatattatttagcagtttgatattgcatgttttgatggtatatccgtgtat |
206482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 43997903 - 43997814
Alignment:
| Q |
43 |
agaatattatttagctgtttgatattgcttgtttttatggtata-cccgtgtat----ccaaccgaaactttgatccaactatgcttcat |
127 |
Q |
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||||||||||||||| ||||||| |||| | |||| |||||||| ||||||||| |||||| ||||||||| |||||||||||||| |
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| T |
43997903 |
agaatattatttagcagtttgattttgcatattttgatggtataccccgtgtatccaaccaaccaaaactttgaatcaactatgcttcat |
43997814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 43632306 - 43632354
Alignment:
| Q |
53 |
ttagctgtttgatattgcttgtttttatggtatacccgtgtatccaacc |
101 |
Q |
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| T |
43632306 |
ttagcagtttgattttgcatattttgatggtatacccgtgtatccaacc |
43632354 |
T |
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