View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7801_low_14 (Length: 276)
Name: NF7801_low_14
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7801_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 23522514 - 23522753
Alignment:
| Q |
23 |
aaaagaatttaagagaagatatttactagtattatttaatattgagtagcatttatatagccattacaaaggaaaataaa-gcccagaagtacacaaact |
121 |
Q |
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| T |
23522514 |
aaaagaatttaagagaagatatgtactagtattatttaatattgagtagcatttatatagccattacaaaggaaaataaaagcccagaagtacacaaact |
23522613 |
T |
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| Q |
122 |
gtgatcataaattacctatttaatcctctaccatatatctatatagttgagcatcatcttcagtctgttatctgtgatctatttttacttatatatggcc |
221 |
Q |
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| T |
23522614 |
gtgatcataaattaactatttaatcctctaccatatatctatatagttgagcatcatcttcagtctgttatctgtgatctattttcacttatatatggcc |
23522713 |
T |
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| Q |
222 |
tatgctagcactctatcaccgtcttctcttcacaattaat |
261 |
Q |
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| T |
23522714 |
tatgctagcactctatcaccgtcttctcttcacaattaat |
23522753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 23517234 - 23517356
Alignment:
| Q |
78 |
tatagccattacaaaggaaaataaagcccagaagtacacaaactgtgatcataaattacctatttaatcctctaccatatatctatatagttgagcatca |
177 |
Q |
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| T |
23517234 |
tatagccattacaaaggaaagtaaaaac--gcagaacacaaactatgatcataaattaactatttcatcctctactatatatagttatagttgagcatca |
23517331 |
T |
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| Q |
178 |
tcttcagtctgttatctgtgatcta |
202 |
Q |
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| T |
23517332 |
tcttccatcagttatctgtgatcta |
23517356 |
T |
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