View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7801_low_19 (Length: 235)

Name: NF7801_low_19
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7801_low_19
NF7801_low_19
[»] chr3 (2 HSPs)
chr3 (24-119)||(42155819-42155906)
chr3 (48-119)||(42134564-42134634)
[»] chr7 (1 HSPs)
chr7 (48-106)||(18789047-18789105)
[»] chr8 (2 HSPs)
chr8 (48-99)||(6839672-6839723)
chr8 (48-113)||(42653825-42653890)
[»] chr2 (1 HSPs)
chr2 (56-119)||(30265240-30265303)
[»] chr5 (1 HSPs)
chr5 (57-107)||(43496639-43496689)
[»] chr1 (1 HSPs)
chr1 (48-119)||(28773261-28773334)


Alignment Details
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 42155819 - 42155906
Alignment:
Q  24 gagaggagatgaatggagggttggaatatttagaaaaatagaaaaatcttttatatttttcgaaagaacaattttttcgagaatagtaaactaatg 119  Q
    ||||||||  ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42155819 gagaggaggggaatggagggttggaatatttaga--------aaaatcttttatatttttcgaaagaacaattttttcgagaataataaactaatg 42155906  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 42134564 - 42134634
Alignment:
Q  48 aatatttagaaaaatagaaaaatcttttatatttttcgaaagaacaattttttcgagaatagtaaactaatg 119  Q
    ||||| ||||||||| ||||||||||| | ||||||| ||||| ||||||||| ||||||  ||||||||||    
T  42134564 aatatatagaaaaat-gaaaaatctttaacatttttcaaaagagcaattttttagagaatgctaaactaatg 42134634  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 18789105 - 18789047
Alignment:
Q  48 aatatttagaaaaatagaaaaatcttttatatttttcgaaagaacaattttttcgagaa 106  Q
    ||||| |||||||||  ||||||||||||||||||| |||||||||||||||| |||||    
T  18789105 aatatatagaaaaatgaaaaaatcttttatattttttgaaagaacaattttttagagaa 18789047  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 6839672 - 6839723
Alignment:
Q  48 aatatttagaaaaatagaaaaatcttttatatttttcgaaagaacaattttt 99  Q
    ||||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  6839672 aatatgtagaaaaatagagaaatctttcatacttttcgaaagaacaattttt 6839723  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 42653825 - 42653890
Alignment:
Q  48 aatatttagaaaaatagaaaaatcttttatatttttcgaaagaacaattttttcgagaatagtaaa 113  Q
    ||||| || ||||||| |||||||||| | ||| ||||||||||||| ||||| ||||||| ||||    
T  42653825 aatatatataaaaataaaaaaatctttcacattcttcgaaagaacaaatttttagagaataataaa 42653890  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 30265240 - 30265303
Alignment:
Q  56 gaaaaatagaaaaatcttttatatttttcgaaagaacaattttttcgagaatagtaaactaatg 119  Q
    ||||||||| |||||||||||||||||| ||||||  |||||||| ||||||| |||| |||||    
T  30265240 gaaaaatagtaaaatcttttatattttttgaaagagtaattttttagagaataataaattaatg 30265303  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 43496689 - 43496639
Alignment:
Q  57 aaaaatagaaaaatcttttatatttttcgaaagaacaattttttcgagaat 107  Q
    |||||||||||||||||| |||||||| |||||| ||||||||| ||||||    
T  43496689 aaaaatagaaaaatctttcatattttttgaaagagcaattttttggagaat 43496639  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 28773261 - 28773334
Alignment:
Q  48 aatatttagaaaaatagaaaaatctttt--atatttttcgaaagaacaattttttcgagaatagtaaactaatg 119  Q
    ||||| ||||||||| |||||||||| |  | ||||||||||||||||||||||| ||||||  ||||||||||    
T  28773261 aatatatagaaaaatggaaaaatcttatccacatttttcgaaagaacaattttttagagaatgataaactaatg 28773334  T

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