View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7801_low_21 (Length: 225)

Name: NF7801_low_21
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7801_low_21
NF7801_low_21
[»] chr7 (4 HSPs)
chr7 (71-211)||(10183973-10184113)
chr7 (134-197)||(22779197-22779260)
chr7 (135-190)||(29235903-29235958)
chr7 (135-187)||(24600071-24600123)
[»] chr8 (6 HSPs)
chr8 (134-200)||(32549690-32549756)
chr8 (135-209)||(19735785-19735859)
chr8 (128-200)||(32549776-32549848)
chr8 (143-200)||(19735717-19735774)
chr8 (135-200)||(17855831-17855896)
chr8 (164-200)||(33059835-33059871)
[»] chr4 (10 HSPs)
chr4 (135-200)||(13412742-13412807)
chr4 (135-200)||(54569587-54569652)
chr4 (134-196)||(13412655-13412718)
chr4 (134-209)||(51267144-51267219)
chr4 (134-209)||(54569663-54569738)
chr4 (134-200)||(51267068-51267134)
chr4 (133-198)||(53359800-53359865)
chr4 (136-200)||(24970796-24970860)
chr4 (135-201)||(5536738-5536805)
chr4 (144-190)||(53787336-53787382)
[»] chr5 (7 HSPs)
chr5 (133-209)||(34255238-34255314)
chr5 (146-200)||(26636818-26636872)
chr5 (134-200)||(26636892-26636958)
chr5 (134-211)||(6167949-6168026)
chr5 (134-200)||(34255161-34255227)
chr5 (152-209)||(7212288-7212345)
chr5 (135-200)||(7212356-7212421)
[»] chr1 (4 HSPs)
chr1 (144-200)||(12018499-12018555)
chr1 (145-200)||(10357938-10357993)
chr1 (163-200)||(26533667-26533704)
chr1 (135-211)||(10358002-10358078)
[»] chr3 (6 HSPs)
chr3 (143-200)||(7138393-7138450)
chr3 (152-200)||(50970621-50970669)
chr3 (152-200)||(51073757-51073805)
chr3 (141-200)||(30672514-30672573)
chr3 (134-200)||(17103725-17103791)
chr3 (129-195)||(30672598-30672664)
[»] chr6 (2 HSPs)
chr6 (129-159)||(6047921-6047951)
chr6 (142-200)||(24265555-24265613)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 10183973 - 10184113
Alignment:
Q  71 gagtataatattaagagttccgttttctcgagaactagaatattgagagttaagaccaaaataatactccctccggtcatatttacaagcaacttttgct 170  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10183973 gagtataatattaagagtcccgttttctcgagaactagaatattaagagttaagaccaaaataatactccctccggtcatatttataagcaacttttgct 10184072  T
Q  171 tttccagattcattaaataactgatgtatcaagagtataat 211  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10184073 tttccagattcattaaataactgatgtatcaagagtataat 10184113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 22779260 - 22779197
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgt 197  Q
    ||||||| |||||||| ||||| |||||| |||| ||||| |||||||||||||||||||||||    
T  22779260 atactccatccggtcacatttataagcaaattttcctttttcagattcattaaataactgatgt 22779197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 29235958 - 29235903
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataa 190  Q
    ||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||    
T  29235958 tactccctccggtcacatttataagcaacttttgctttttgagattcattaaataa 29235903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 24600123 - 24600071
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaa 187  Q
    ||||||||| ||||| ||||||||| ||| ||| ||||| |||||||||||||    
T  24600123 tactccctctggtcacatttacaagtaacattttctttttcagattcattaaa 24600071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 32549690 - 32549756
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||||||||||||| ||||| | |||||||||||||||  |||||||||||||||||||||||||    
T  32549690 atactccctccggtcacatttatacgcaacttttgcttttttagattcattaaataactgatgtatc 32549756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 19735859 - 19735785
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatcaagagtata 209  Q
    ||||||||||||||| ||||| ||||||||||| | ||| || ||||||||||||| ||||||||||||| ||||    
T  19735859 tactccctccggtcacatttataagcaacttttaccttttcatattcattaaataagtgatgtatcaagactata 19735785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 32549848 - 32549776
Alignment:
Q  128 aaaataatactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||| ||||||||| ||||| ||||| |||||||||||||||||  |||||||||||||||  ||||||||    
T  32549848 aaaatactactccctctggtcacatttataagcaacttttgctttttgagattcattaaataaacgatgtatc 32549776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 19735717 - 19735774
Alignment:
Q  143 ccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||| ||||| |||||||||||||||||  |||||||||||| || |||||||||    
T  19735717 ccggtcacatttataagcaacttttgcttttttagattcattaaacaattgatgtatc 19735774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 17855831 - 17855896
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||  |||||  |||| || ||||||||| |||| |||||||||||||||| |||||||||    
T  17855831 tactccctttggtcacgtttataaacaacttttgttttttcagattcattaaataattgatgtatc 17855896  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 33059835 - 33059871
Alignment:
Q  164 ttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||||||| |||||||||||||||| |||||||||    
T  33059835 ttttgctttttcagattcattaaataattgatgtatc 33059871  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 13412807 - 13412742
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||  ||||||||||||||||||||||    
T  13412807 tactccctccggtcacatttataagcaacttttgctttttcatgttcattaaataactgatgtatc 13412742  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 54569587 - 54569652
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||| | |||||||    
T  54569587 tactccctccggtcacatttataagcaacttttgcttttgcaggttcattaaataattaatgtatc 54569652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 13412655 - 13412718
Alignment:
Q  134 atactccctccggtcatatttacaagc-aacttttgcttttccagattcattaaataactgatg 196  Q
    |||||||||||||||| ||||| |||| ||| ||||||||| ||||||||||||||||||||||    
T  13412655 atactccctccggtcacatttataagctaacatttgctttttcagattcattaaataactgatg 13412718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 51267219 - 51267144
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatcaagagtata 209  Q
    |||||||||| ||||| ||||| |||||||||||| |||| |||||||||||| ||||| || |||||||| ||||    
T  51267219 atactccctctggtcacatttataagcaacttttgttttttcagattcattaattaacttatatatcaagactata 51267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 54569738 - 54569663
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatcaagagtata 209  Q
    |||||||||| ||| ||||||| ||||||||||| ||||| ||||||||| |||||| ||||||||| ||| ||||    
T  54569738 atactccctctggttatatttataagcaacttttactttttcagattcatgaaataagtgatgtatctagactata 54569663  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 51267068 - 51267134
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||||||||||||| ||||| ||||||||||    |||  |||||||||||||||||||||||||    
T  51267068 atactccctccggtcacatttataagcaactttcaactttttagattcattaaataactgatgtatc 51267134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 53359800 - 53359865
Alignment:
Q  133 aatactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgta 198  Q
    |||||||| | |||||| ||||| ||||||| ||||| ||| |||||||||||||||| |||||||    
T  53359800 aatactccattcggtcacatttataagcaacatttgcgttttcagattcattaaataattgatgta 53359865  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 24970796 - 24970860
Alignment:
Q  136 actccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||| ||||||||| ||||| || |||||||| ||||| |||||||||||||||| ||| |||||    
T  24970796 actctctccggtcacatttataaacaacttttactttttcagattcattaaataagtgacgtatc 24970860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 5536738 - 5536805
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcatt-aaataactgatgtatca 201  Q
    ||||||| | ||||| ||||| ||||||||||||||||| || ||||||| ||| |||||||||||||    
T  5536738 tactccccctggtcacatttataagcaacttttgctttttcatattcattaaaacaactgatgtatca 5536805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 53787336 - 53787382
Alignment:
Q  144 cggtcatatttacaagcaacttttgcttttccagattcattaaataa 190  Q
    |||||||||||  ||||||||||||||||| || |||||||||||||    
T  53787336 cggtcatatttctaagcaacttttgctttttcatattcattaaataa 53787382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 34255314 - 34255238
Alignment:
Q  133 aatactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatcaagagtata 209  Q
    |||||| |||||||||| ||||| ||||||||||| |||||  ||||||||||||||| ||||||||| ||| ||||    
T  34255314 aatacttcctccggtcacatttataagcaacttttacttttttagattcattaaataagtgatgtatctagactata 34255238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 26636818 - 26636872
Alignment:
Q  146 gtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||| ||||| ||||||||||| ||||| |||||||||||||||| |||||||||    
T  26636818 gtcacatttataagcaacttttactttttcagattcattaaataaatgatgtatc 26636872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 26636958 - 26636892
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||| |||||| ||||| |||||||||||| |||  |||||| ||||||||| |||||||||    
T  26636958 atactcccttcggtcacatttataagcaacttttgttttgtcagatttattaaataagtgatgtatc 26636892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 6168026 - 6167949
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatcaagagtataat 211  Q
    |||||||||| ||||| ||||| || |||||||||||||   | |||||||||||||| |||||||| ||| ||||||    
T  6168026 atactccctctggtcacatttataaacaacttttgctttaatatattcattaaataaccgatgtatctagaatataat 6167949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 34255161 - 34255227
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||||||||| ||| || || |||||||||||||||||  || |||||||||| |||||| ||||    
T  34255161 atactccctccgatcacatatataagcaacttttgcttttttaggttcattaaatcactgatatatc 34255227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 7212288 - 7212345
Alignment:
Q  152 tttacaagcaacttttgcttttccagattcattaaataactgatgtatcaagagtata 209  Q
    |||| |||||| |||| ||||| |||||||||||||||| ||||||||| ||| ||||    
T  7212288 tttataagcaatttttcctttttcagattcattaaataagtgatgtatctagattata 7212345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 7212421 - 7212356
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||||| |||||| ||||| || ||||||||  ||||  ||||||||||||||| |||||||||    
T  7212421 tactcccttcggtcacatttataaacaacttttatttttttagattcattaaataattgatgtatc 7212356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 12018555 - 12018499
Alignment:
Q  144 cggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||| |||||||||    
T  12018555 cggtcatatttacaagcaacttttgcatttttagattcattaaataattgatgtatc 12018499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 10357938 - 10357993
Alignment:
Q  145 ggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||||| |||||||||||  |||| ||||||||| |||||| |||||||||    
T  10357938 ggtcatatttataagcaacttttcttttttcagattcataaaataattgatgtatc 10357993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 26533704 - 26533667
Alignment:
Q  163 cttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  26533704 cttttgttttttcagattcattaaataactgatgtatc 26533667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 10358078 - 10358002
Alignment:
Q  135 tactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatcaagagtataat 211  Q
    ||||||||||||| | ||||| |||||||||||  | ||| | ||||||||||||||| ||| ||| ||| ||||||    
T  10358078 tactccctccggtaacatttataagcaacttttcttattcaatattcattaaataacttatgaatctagattataat 10358002  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 7138393 - 7138450
Alignment:
Q  143 ccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||||    
T  7138393 ccggtcatatttataagcaacttttcctttttcaaattcattaaataaccgatgtatc 7138450  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 50970669 - 50970621
Alignment:
Q  152 tttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||| ||||||||||| ||||| |||||||||||||||| |||||||||    
T  50970669 tttataagcaacttttactttttcagattcattaaataattgatgtatc 50970621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 51073805 - 51073757
Alignment:
Q  152 tttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||| ||||||||||| ||||| |||||||||||||||| |||||||||    
T  51073805 tttataagcaacttttactttttcagattcattaaataattgatgtatc 51073757  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 30672514 - 30672573
Alignment:
Q  141 ctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||||||||| |||||| |||| | |||  ||||||||||||||| |||||||||    
T  30672514 ctccggtcatatttataagcaaattttccatttttagattcattaaataattgatgtatc 30672573  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 17103791 - 17103725
Alignment:
Q  134 atactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    ||||||||||  || | ||||| || |||||||||  ||| ||||||||||||||||||||||||||    
T  17103791 atactccctctagtaacatttataaacaacttttgtcttttcagattcattaaataactgatgtatc 17103725  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 30672664 - 30672598
Alignment:
Q  129 aaataatactccctccggtcatatttacaagcaacttttgcttttccagattcattaaataactgat 195  Q
    ||||||||||| || |||||| ||||| ||  |||||||| ||||| ||||| ||||||||||||||    
T  30672664 aaataatactctcttcggtcacatttataaataacttttgtttttcaagatttattaaataactgat 30672598  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 159
Target Start/End: Complemental strand, 6047951 - 6047921
Alignment:
Q  129 aaataatactccctccggtcatatttacaag 159  Q
    |||||||||||||||||||||||||||||||    
T  6047951 aaataatactccctccggtcatatttacaag 6047921  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 24265613 - 24265555
Alignment:
Q  142 tccggtcatatttacaagcaacttttgcttttccagattcattaaataactgatgtatc 200  Q
    |||||||| ||||| ||||||||||| |||||  ||||| ||||||||| |||||||||    
T  24265613 tccggtcagatttataagcaactttttcttttttagatttattaaataattgatgtatc 24265555  T

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