View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7801_low_8 (Length: 427)

Name: NF7801_low_8
Description: NF7801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7801_low_8
NF7801_low_8
[»] chr5 (14 HSPs)
chr5 (1-391)||(1580634-1581024)
chr5 (1-391)||(1603791-1604181)
chr5 (62-334)||(1587191-1587463)
chr5 (62-350)||(1590760-1591048)
chr5 (377-427)||(1586795-1586845)
chr5 (377-427)||(1586909-1586959)
chr5 (377-417)||(1586775-1586815)
chr5 (377-427)||(1591045-1591095)
chr5 (377-417)||(1586889-1586929)
chr5 (377-423)||(1591075-1591121)
chr5 (377-417)||(1587030-1587070)
chr5 (396-427)||(1586825-1586856)
chr5 (396-427)||(1586939-1586970)
chr5 (396-427)||(1591034-1591065)
[»] chr3 (2 HSPs)
chr3 (62-335)||(19270343-19270616)
chr3 (377-423)||(19270870-19270916)
[»] chr7 (2 HSPs)
chr7 (61-227)||(39616012-39616178)
chr7 (243-362)||(39616233-39616349)


Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 1581024 - 1580634
Alignment:
Q  1 ccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1581024 ccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttac 1580925  T
Q  101 tgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580924 tgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg 1580825  T
Q  201 aggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttca 300  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580824 aggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttca 1580725  T
Q  301 tcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggcgaa 391  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1580724 tcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggcgaa 1580634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 1603791 - 1604181
Alignment:
Q  1 ccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1603791 ccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctttaagtgacattaaaagacgactttggtgtttac 1603890  T
Q  101 tgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1603891 tgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgatcttgatctcgacatcaataggcaatattggcgg 1603990  T
Q  201 aggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttca 300  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1603991 aggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttca 1604090  T
Q  301 tcacttgagcgacaccttttcttcttattcactacttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggcgaa 391  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604091 tcacttgagcgacaccttttcttcttattcactgcttctcctttcattgtgctttgtggaatattaagaggcaattttgtttcttggcgaa 1604181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 62 - 334
Target Start/End: Complemental strand, 1587463 - 1587191
Alignment:
Q  62 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc 161  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||| | ||||| |||||    
T  1587463 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 1587364  T
Q  162 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt 261  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| ||       |||   |||||||||||| ||||||||    
T  1587363 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt 1587264  T
Q  262 ttcactcttcttttcgccttatcagcca---tgctaccttcatcacttgagcgacaccttttcttcttattcacta 334  Q
    || ||||||||||   ||  || || ||   |||||||||||||||||||||||||||||||||| ||||||||||    
T  1587263 ttaactcttcttt---ccacataagacatgctgctaccttcatcacttgagcgacaccttttctttttattcacta 1587191  T

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Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 62 - 350
Target Start/End: Original strand, 1590760 - 1591048
Alignment:
Q  62 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc 161  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||| ||  || ||||||  ||||||||||||| |||||||||| | ||||| |||||    
T  1590760 cttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 1590859  T
Q  162 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt 261  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| ||       |||   |||||||||||| ||||||||    
T  1590860 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt 1590959  T
Q  262 ttcactcttcttttcgcct-tatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcctttcattgt 350  Q
    || || ||||||| ||| |  | ||  | |||||||||||||||||||||||||||||||||| |||||||| || ||||||| ||||||    
T  1590960 ttaacacttctttccgcataaaacatgc-tgctaccttcatcacttgagcgacaccttttctttttattcacgacatctccttccattgt 1591048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 1586845 - 1586795
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaacatgat 427  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1586845 ttgtttcttggcgaacatgatctccttccgttgtttcttggcgaacatgat 1586795  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 1586959 - 1586909
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaacatgat 427  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  1586959 ttgtttcttggcgaacatgatctccttccgttgtttcttggtgaacatgat 1586909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 1586815 - 1586775
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttgg 417  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1586815 ttgtttcttggcgaacatgatctccttccattgtttcttgg 1586775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 1591045 - 1591095
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaacatgat 427  Q
    |||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  1591045 ttgtttcttggcgaacatgatctcgtgccattgtttcttggcaaacatgat 1591095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 1586929 - 1586889
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttgg 417  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1586929 ttgtttcttggtgaacatgatctccttccattgtttcttgg 1586889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 1591075 - 1591121
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaaca 423  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||||    
T  1591075 ttgtttcttggcaaacatgatctcgttccattgtttcttggagaaca 1591121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 1587070 - 1587030
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttgg 417  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  1587070 ttgttttttggcgaacatgatctccttctattgtttcttgg 1587030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 1586856 - 1586825
Alignment:
Q  396 atctccttccattgtttcttggcgaacatgat 427  Q
    ||||||||||||||||||||||||||||||||    
T  1586856 atctccttccattgtttcttggcgaacatgat 1586825  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Complemental strand, 1586970 - 1586939
Alignment:
Q  396 atctccttccattgtttcttggcgaacatgat 427  Q
    ||||||||||||||||||||||||||||||||    
T  1586970 atctccttccattgtttcttggcgaacatgat 1586939  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 427
Target Start/End: Original strand, 1591034 - 1591065
Alignment:
Q  396 atctccttccattgtttcttggcgaacatgat 427  Q
    ||||||||||||||||||||||||||||||||    
T  1591034 atctccttccattgtttcttggcgaacatgat 1591065  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 62 - 335
Target Start/End: Original strand, 19270343 - 19270616
Alignment:
Q  62 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc 161  Q
    |||||||||  |||||||| |||||| ||||||  |   |||||| |||  |||||||||  |||| |||||||| |||||||||| | |||||||||||    
T  19270343 cttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactc 19270442  T
Q  162 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt 261  Q
    |||||||||| |||| |  | ||||||||||||||| ||||| |||||||| ||||||||||||||       |||  ||||||||||||||||||||||    
T  19270443 tttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggt 19270542  T
Q  262 ttcactcttcttttcgccttatcagccatg---ctaccttcatcacttgagcgacaccttttcttcttattcactac 335  Q
    |||||||||||||  ||    | || ||||   ||||||||||||||||||| |||||||||||| |||||||||||    
T  19270543 ttcactcttctttctgc---gtgagacatgcttctaccttcatcacttgagcaacaccttttctttttattcactac 19270616  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 19270870 - 19270916
Alignment:
Q  377 ttgtttcttggcgaacatgatctccttccattgtttcttggcgaaca 423  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  19270870 ttgtttcttggcgaacatgatctcgttcctttgtttcttggagaaca 19270916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 227
Target Start/End: Original strand, 39616012 - 39616178
Alignment:
Q  61 tcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaact 160  Q
    ||||||||||||| |||||||||||||||||||  || |  || ||||||  ||||||||| |||  ||||||||| | |||||||| | ||||||||||    
T  39616012 tcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaact 39616111  T
Q  161 ctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttg 227  Q
    | ||||||||| ||| ||||| |||||| ||||||||||||||| | | ||| |||| |||||||||    
T  39616112 ccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatcttg 39616178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 362
Target Start/End: Original strand, 39616233 - 39616349
Alignment:
Q  243 cttcttcgtgctctttggtttcactcttcttttcgccttatcagccatgctaccttcatcacttgagcgacaccttttcttcttattcactacttctcct 342  Q
    |||||||||| |||||||||||  |||||||| |||   || || ||||||| ||||||||| || |||||||||||||||  ||||| |||||||||||    
T  39616233 cttcttcgtggtctttggtttcgttcttctttccgc---ataagacatgctaacttcatcacatgggcgacaccttttcttggtattcgctacttctcct 39616329  T
Q  343 ttcattgtgctttgtggaat 362  Q
    | || |||| ||||||||||    
T  39616330 tccactgtgttttgtggaat 39616349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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