View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_high_10 (Length: 416)
Name: NF7802_high_10
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 47333349 - 47332964
Alignment:
| Q |
13 |
aatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcataggt |
112 |
Q |
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| T |
47333349 |
aatatccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccatactttcataggt |
47333250 |
T |
|
| Q |
113 |
gaactttgttcatgcccttcaactgattctgacaaaatcggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcaccag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333249 |
gaactttgttcatgcccttcaactgattctgacaaaaccggcttcgaactccaaaacaaaggaaaagcaagtaatgctcctctaattttcacatcaccag |
47333150 |
T |
|
| Q |
213 |
gtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaatcaccgta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333149 |
gtaaagtttcaacaccattaccaacacgaagaagtgcattatgtgcaatatttgcacctgaagtatcaccaccaatgtaaaaacggtcaaaatcaccgta |
47333050 |
T |
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| Q |
313 |
tttgattaaccatggttcagcgttattgatgttgttgatggaatgagaagtgatccatttgagagaaaaccaaccatcatcatatg |
398 |
Q |
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| T |
47333049 |
tttgattaaccatggttcagcgttattgatgttgttgatggaatgagaagtgatccatttgagagaaaaccaaccatcatcatatg |
47332964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 47301763 - 47301704
Alignment:
| Q |
43 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
102 |
Q |
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|||||| |||| ||| |||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
47301763 |
aggattaatcataggattatcaatcccaccgggtgctgaaggatacacaaaattccaaac |
47301704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 17841900 - 17841841
Alignment:
| Q |
43 |
aggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaac |
102 |
Q |
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|||||| |||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
17841900 |
aggattaatcataggattatcaatcccacaaggtgctgaaggatacacaaaattccaaac |
17841841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 653540 - 653632
Alignment:
| Q |
18 |
ccaaacttggagcatcaatagccaaaggattgatcaaagggttatcaatcccaccaggtgcatcaggatacacaaaattccaaactttcatag |
110 |
Q |
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||||||| || ||| ||||||| ||||||| | || |||||||||||||||||| ||||| ||| |||||||| ||||| ||||| |||| |
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| T |
653540 |
ccaaactaggtgcaccaatagcacaaggattaaccatagggttatcaatcccaccctttgcattagggtacacaaagttccacactttaatag |
653632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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