View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_high_2 (Length: 710)

Name: NF7802_high_2
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_high_2
NF7802_high_2
[»] chr3 (1 HSPs)
chr3 (1-692)||(55297735-55298431)


Alignment Details
Target: chr3 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Original strand, 55297735 - 55298431
Alignment:
Q  1 ggaggaggatgagcgcggtgaatatcacgaacgtgacggtcctcgacaatccagcttcgtttctcaatccctttcagttcgagatttcctatgagtgttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55297735 ggaggaggatgagcgcggtgaatatcacgaacgtgacggtcctcgacaatccagcttcgtttctcaatccctttcagttcgagatttcctatgagtgttt 55297834  T
Q  101 ggccgctctcaaagatggtatcgtttctctttactctactacttttctaacctaattcatttcttcatttatcttgctttagatcttcaattttcgtttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55297835 ggccgctctcaaagatggtatcgtttctctttactctactacttttctaacctaattcatttcttcatttatcttgctttagatcttcaattttcgtttt 55297934  T
Q  201 cg------ctgtgttaggttagggtttagggtttttcttttcagatcttgtttctgttcccaaatttgacctaattttgttagttatttagggcaccaat 294  Q
    ||      || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55297935 cgttttcgctctgttaggttagggtttagggtttttcttttcagatcttgtttctgttcccaaatttgacctaattttgttagttatttagggcaccaat 55298034  T
Q  295 cctctactttcttgnnnnnnnnn-agggtttaggttgttctactcccccatgtaatctaatctaatctaactatattttgtaaaataaagtaaaatgtgg 393  Q
    |||||  |||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55298035 cctct--tttcttgtttttattttagggtttaggttgttctactcccccatgtaatctaatctaatctaactatattttgtaaaataaagtaaaatgtgg 55298132  T
Q  394 actatcatgtcaatttgggtcaaaatagggtttactccattgttgtgacaacatatgctcttgtcatagatttggaatggaagctcatctatgttggatc 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55298133 actatcatgtcaatttgggtcaaaatagggtttactccattgttgtgacaacatatgctcttgtcatagatttggaatggaagctcatctatgttggatc 55298232  T
Q  494 tgctgaggatgagacttatgaccagttattggagagtgtccttgttggtcctgtcaatgttggaaactatcgctttgttttacaggcaatcatctccttt 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55298233 tgctgaggatgagacttatgaccagttattggagagtgtccttgttggtcctgtcaatgttggaaactatcgctttgttttacaggcaatcatctccttt 55298332  T
Q  594 atcaattctgttgccacttcttataaataaatatatataatattcaaccttatcaattctcttctcttttcataacaggcagatccaccagacccatcc 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  55298333 atcaattctgttgccacttcttataaataaatatatataatattcaaccttaacaattctcttctctttttataacaggcagatccaccagacccatcc 55298431  T

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