View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_high_20 (Length: 367)
Name: NF7802_high_20
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 30495054 - 30495395
Alignment:
| Q |
8 |
ttggtgttgcttgggatgcaaggatggaaagaagaaaggtacatcagaaacatggcttgtcgacttggtgaaatcgggtaacggtgcaattcttcctagt |
107 |
Q |
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| T |
30495054 |
ttggtgttgcttgggatgcaaggatggaaagaagaaaggtacatcagaaacatggcttgtggacttggtgaaatcgggtaacggtgcaattcttcctaat |
30495153 |
T |
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| Q |
108 |
tgtgaggctatacaagtcttgtatagagaaaagaaaggaagagataaaaagatagcaaaaggagtggcttttgaaattgtgtacaatggtaaaaaagaca |
207 |
Q |
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| T |
30495154 |
tgtgaggctatacaagtcttgtatagagaaaagaaaggaacagatagaaagatagcaaaaggagtggcctttgaaattgactacaacggtaaaaaagaca |
30495253 |
T |
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| Q |
208 |
tttgcgtggtcgagtctaaggtcacaattgtagcctgtggagcactgagcactccgtcgttactcaaaagaagtggtttgaaaaatgaaaacatagggag |
307 |
Q |
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| T |
30495254 |
tttgcgtggtcgagtctaaggtcacaattgtagcctgtggagcgctatgtactccatcattactcaaaagaagtggtttgaaaaatgaaaacatagggag |
30495353 |
T |
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| Q |
308 |
aaacttgcatcttcatccagtgacaatggcttggggctactt |
349 |
Q |
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| T |
30495354 |
aaacttgcatcttcatccagtgacaatggcttggggctactt |
30495395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 10450369 - 10450029
Alignment:
| Q |
9 |
tggtgttgcttgggatgcaaggatggaaagaagaaaggtacatcagaaacatggcttgtcgacttggtgaaatcgggtaacggtgcaattcttcctagtt |
108 |
Q |
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| T |
10450369 |
tggtgctgtttgggatgtaaggatggaaagaagaagggtacatcggaaacatggttggtggacttggtgaaatctggcaatggggcgattcttcccggtt |
10450270 |
T |
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| Q |
109 |
gtgaggctatacaagtcttgtatagagaaaagaaaggaagagataaaaagatagcaaaaggagtggcttttgaaattgtgtacaatggtaaaaaagacat |
208 |
Q |
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| T |
10450269 |
gtacagcaatgaaagttttgcataagaaaaagaaaggaagtggtgaaaagaccgcgcgaggagtggcatttgaatttgaatacagaggaagtaaagacat |
10450170 |
T |
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| Q |
209 |
ttgcgtggtcgagtctaaggtcacaattgtagcctgtggagcactgagcactccgtcgttactcaaaagaagtggtttgaaaaatgaaaacatagggaga |
308 |
Q |
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| T |
10450169 |
ttgcgtggtcgaatccaaggtcacaattgtagcttgtggaacactcaatactccatcattgcttaaaagaagcggattaaaaaataacaacatagggaga |
10450070 |
T |
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| Q |
309 |
aacttgcatcttcatccagtgacaatggcttggggctactt |
349 |
Q |
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| T |
10450069 |
aacttgcatcttcatccggtggtaatggcctggggctactt |
10450029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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