View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_high_22 (Length: 356)
Name: NF7802_high_22
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 36057456 - 36057134
Alignment:
| Q |
18 |
gcatgcaatccaaatccttgaaacttaggcttctgaataaagagcagcggcaaatatcacccaacaaaatgacaagctgaacttcacagtcctctctcta |
117 |
Q |
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| T |
36057456 |
gcatgcaatccaaatccttgaaacttaggcttctgaataaagagcagcggcaaatatcacccaacaaaatgacaagctgaacttcacagtcctctctcta |
36057357 |
T |
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| Q |
118 |
cgaagttagcaatttacaagtataaattatatattcaaagtttagatcagctaattgtcaaataatgaacaattaggaaatgacccgttttgatcattgc |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36057356 |
cgaagttggcaatttacaagtataaattatatattcaaaatttagatcagctaattgtcaaataatgaacaattaggaaatgacccgttttgatcattgc |
36057257 |
T |
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| Q |
218 |
caacatttaaaaatcattgttttgccgg-attttagtcaaaggatccacttccagactgattattgaaactgtcatcgcccttgaagtcctccatctttg |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36057256 |
caacatttaaaaatcattgttttgccggaattttagtcaaaggatccacttccagactgattattgaaactgtcatcgcccttgaagtcctccatctttg |
36057157 |
T |
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| Q |
317 |
aatcataacagaaactccaaact |
339 |
Q |
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||||||||||||||||||||||| |
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| T |
36057156 |
aatcataacagaaactccaaact |
36057134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 36057544 - 36057515
Alignment:
| Q |
18 |
gcatgcaatccaaatccttgaaacttaggc |
47 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36057544 |
gcatgcaatccaaatccttgaaacttaggc |
36057515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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