View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7802_high_3 (Length: 621)
Name: NF7802_high_3
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 11 - 601
Target Start/End: Complemental strand, 7830808 - 7830222
Alignment:
| Q |
11 |
tcgaagaatatcagacagagctaattgtaaagtttgttaaatttggtaatgagcttgtcgccgatgttatgaaataacaacattgacatatatagtaacc |
110 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7830808 |
tcgaagattatcagacagagttaattgtaaagtttgttaaatttggaaatgagtttgtcgccgatgttatgaaataacaacattga--tatatagtaact |
7830711 |
T |
|
| Q |
111 |
aaagatatatacatataatgatgagatatgataggatattatggtaaatctattttgtgttgatattgcataagaattgaagtatattaatatatgttta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7830710 |
aaagatatatacatataatgatgagatatgataggatattatggtaaatctattttgttttgatattgcataagaattgaagtatattaatatatgttta |
7830611 |
T |
|
| Q |
211 |
caaaattctttnnnnnnnntata--tgtttaccaaataaaactagtatccaatcctcatgggtttgcttcgtggtttaggttgggatctttgatggtcaa |
308 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7830610 |
caaaattctttcaaaaaaaaaaaaatgtttaccaaataaaactagtatccaatcctcatgggtttgcttcgtggtttaggttgggatctttgatggtcaa |
7830511 |
T |
|
| Q |
309 |
aattttaagattagagtaatgcctccaaagtgtttaagatgatcttgttcttatttgcaagttaatttgtctaccctagattcgtccctgcactgcaacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7830510 |
aattttaagattagagtaatgcctccaaagtgtttaagatgatcttgctcttatttgcaagttaatttgtctcccctagattcgtccctgcactgcaacc |
7830411 |
T |
|
| Q |
409 |
cctcttagctcggtatctagatccactactgaatttgtttattgtgcgacaaatttgtttgaagacccaaattctaataataatttttaagggactaaat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7830410 |
cctcttagctcggtatctagatccactactgaatctgtttattgtgcgacaaatttgtttgaagacccaaattctaataataatttttaagggcctaaat |
7830311 |
T |
|
| Q |
509 |
ttttaagattaatcagtattttgaagtgtttaagacggacctacccacccagatatgtaagttaataaagtgcttacaaaagaagatatacgt |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7830310 |
ttttaagattaatcagtattttgaagtgtttaagacggaccta----cccagatatgtaagttaataaagtgcttacaaaagaagatatacgt |
7830222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University