View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_high_38 (Length: 262)
Name: NF7802_high_38
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_38 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: scaffold0188 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 9952 - 10197
Alignment:
| Q |
1 |
tttgaaacaatgcaatatgtattgtgtccactaattgctgtagcatcgttttcaggtgatcttggtcagacttttgattcaaacaggacactttctcact |
100 |
Q |
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| T |
9952 |
tttgaaacaatgcaatatgtattgtgtctactaatcgctgttgcatcgttttcaggtgatcttggtcagacttttgattcaaacaggacactttctcact |
10051 |
T |
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| Q |
101 |
atcaattgaactcaacaaaaggacaaacagttctgtttgttggagatctctcgtatgcagataactacccgaatcatgacaatgttaggtgggatacttg |
200 |
Q |
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| T |
10052 |
atcaatcgaactcaacaaaaggacaaaccgttctgtttgttggagatctctcatatgcagataactacccgaatcatgacaatgttaggtgggatacttg |
10151 |
T |
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| Q |
201 |
gggaagatttgcagaaaggagcgttgcttatcaaccgtggatatgg |
246 |
Q |
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| T |
10152 |
gggaagatttgcagaaaggagcgttgcttatcaaccgtggatatgg |
10197 |
T |
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Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 43 - 246
Target Start/End: Original strand, 13638672 - 13638875
Alignment:
| Q |
43 |
gcatcgttttcaggtgatcttggtcagacttttgattcaaacaggacactttctcactatcaattgaactcaacaaaaggacaaacagttctgtttgttg |
142 |
Q |
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|||| |||| |||| ||||||||||||| | ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
13638672 |
gcattgtttgcaggggatcttggtcagagctatgattcaaacaagacactttctcactacgaattgaacccaacaaaaggacaaacagtgttgtttgttg |
13638771 |
T |
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| Q |
143 |
gagatctctcgtatgcagataactacccgaatcatgacaatgttaggtgggatacttggggaagatttgcagaaaggagcgttgcttatcaaccgtggat |
242 |
Q |
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| T |
13638772 |
gagatctctcatatgcagataactacccgaatcatgacaatgttaggtgggatacttggggaagatttgcagaaaggagcgttgcttatcaaccgtggat |
13638871 |
T |
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| Q |
243 |
atgg |
246 |
Q |
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|||| |
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| T |
13638872 |
atgg |
13638875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 246
Target Start/End: Complemental strand, 50981299 - 50981111
Alignment:
| Q |
58 |
gatcttggtcagacttttgattcaaacaggacactttctcactatcaattgaactcaacaaaaggacaaacagttctgtttgttggagatctctcgtatg |
157 |
Q |
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||||| ||||||| |||||||||||||| ||||||||||||||| ||||||| | | ||| || |||||||| ||||||||||||||||||| ||| |
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| T |
50981299 |
gatctcggtcagagctttgattcaaacagaacactttctcactatgaattgaatcctagaaaggggcaaacagtgttgtttgttggagatctctcttatt |
50981200 |
T |
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| Q |
158 |
cagataactacccgaatcatgacaatgttaggtgggatacttggggaagatttgcagaaaggagcgttgcttatcaaccgtggatatgg |
246 |
Q |
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| T |
50981199 |
cagataactttccaaatcatgacaatgttaggtgggatacttggggaaggtttgtagaaaggagcacggcttatcagccgtggatatgg |
50981111 |
T |
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