View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_high_41 (Length: 253)
Name: NF7802_high_41
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 9604963 - 9604840
Alignment:
| Q |
6 |
ctagattattctccaaatgttccttttttaatatacttgtttgatcaccatagacagcaatatctaacgtgcttttcggtgggaactcctgtcnnnnnnn |
105 |
Q |
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| T |
9604963 |
ctagattaatctccaaatgttccttttttaatatacttgtttgatcaccatagacagcaatatctaacgtgcttttcggtgggaactcctgtcaaaaaaa |
9604864 |
T |
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| Q |
106 |
taatttaatatggcttaaaaatat |
129 |
Q |
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| T |
9604863 |
taatttaatatggcttaaaaatat |
9604840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 9604371 - 9604304
Alignment:
| Q |
162 |
tattcatcattttacaaccgatttctttcaaaaactacaatatcaaactcttatcattaaattgtaac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9604371 |
tattcatcattttacaaccgatttctttcaaaaactacaatatcaaactcttatcattaaattgtaac |
9604304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 9604430 - 9604391
Alignment:
| Q |
121 |
taaaaatatatattaaattgaggagtgtggaaagcattat |
160 |
Q |
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||||||||||||||||| |||||| ||||||||||||||| |
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| T |
9604430 |
taaaaatatatattaaactgaggaatgtggaaagcattat |
9604391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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