View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7802_high_6 (Length: 524)
Name: NF7802_high_6
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 108 - 505
Target Start/End: Original strand, 34352896 - 34353298
Alignment:
| Q |
108 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352896 |
aactaatgctgtcacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgata |
34352995 |
T |
|
| Q |
208 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352996 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtaccatgtcaacagaaaaaatggatattcatcgctgaattgcttggatattctcaagcacag |
34353095 |
T |
|
| Q |
308 |
acaaaataag-----caaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgac |
402 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34353096 |
acaaaataagcaaaacaaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgac |
34353195 |
T |
|
| Q |
403 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaa |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34353196 |
agagacaatggaagacgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaaagcacaagacaaagacttcactaaggaggaagaa |
34353295 |
T |
|
| Q |
503 |
acc |
505 |
Q |
| |
|
||| |
|
|
| T |
34353296 |
acc |
34353298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 120 - 502
Target Start/End: Original strand, 34358547 - 34358920
Alignment:
| Q |
120 |
cacacacacctacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaa |
219 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34358547 |
cacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaa |
34358646 |
T |
|
| Q |
220 |
accattggcgtttttcctatgagctgtaccatgtcaacag---aaaaaatggatattcatcgctgaattgcttggatattctcaagcacagacaaaataa |
316 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| | ||| |||||||||| ||||||| | ||||||| || || ||||||||| |
|
|
| T |
34358647 |
accattggcgtttttcctatgagttgtgccatgcaagcagcaaaaaaaatggagattcatcaccgaattgcatg------ct---------acaaaataa |
34358731 |
T |
|
| Q |
317 |
gcaaaa-caaaacaaaaatagtgt--gaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatgg |
413 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| ||| |
|
|
| T |
34358732 |
gaaaaaacaaaacaaaaatagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtgg |
34358831 |
T |
|
| Q |
414 |
aagacgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaa |
502 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34358832 |
aagacgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaa |
34358920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 130 - 245
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
130 |
tacctgtctttgacactacaacatggctccataagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||| | ||| || ||||| ||||||||||| | |
|
|
| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
|
| Q |
230 |
tttttcctatgagctg |
245 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University