View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7802_high_9 (Length: 465)
Name: NF7802_high_9
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 44464735 - 44465163
Alignment:
| Q |
19 |
tatctgtcaagtaatcatctctctaatactatcagaatgccttgcaggtcctttttaggatgttagatgcactattggccgagcagaaaatgtctgacga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44464735 |
tatctgtcaagtaatcatctctctaatactatcagcatgccttgcaggtcctttttaggatgttagatgcactattggccgagcagaaaatgtctgacga |
44464834 |
T |
|
| Q |
119 |
gttttcgggtcaaactcaggctagtcagctgtttctcatagttcccgtctcatattaagccttcgattttgtattgtttttccaaaatatataatctaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44464835 |
gttttcgggtcaaactcaggctagtcagctgtttctcatagttcccgtctcatattaaaccttcgattttgtattgtttttccgaaatatataatctaat |
44464934 |
T |
|
| Q |
219 |
tgaatttataactgcaggttatattatgtaatgactgtgaaaagaaaggagcagctcccttccactggctttaccacaaatgctcttgttgtggttccta |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44464935 |
tgaatttataactgcaggttattttatgtaatgactgtgaaaagaaaggagcagctcccttccactggctttaccacaaatgctcttgttgtggttccta |
44465034 |
T |
|
| Q |
319 |
taacactagagttatatgattcttccagtgtgagcatagatgtttgcctctcctagcttctctgtatttaagcattagatcatactttgtttttaagttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44465035 |
taacactagagttatatgattcttccagtgtgagcatagatgtttgcctctcccagcttctctgtatttaagcattagatcatactttgtttttaagttt |
44465134 |
T |
|
| Q |
419 |
ttagctctatcacttatgccagaataatc |
447 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
44465135 |
ttagctttatcacttatgccagaataatc |
44465163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University