View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_11 (Length: 427)

Name: NF7802_low_11
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_11
NF7802_low_11
[»] scaffold0038 (4 HSPs)
scaffold0038 (1-411)||(27119-27541)
scaffold0038 (1-208)||(116682-116889)
scaffold0038 (1-211)||(42849-43059)
scaffold0038 (1-208)||(34611-34818)
[»] chr6 (49 HSPs)
chr6 (1-411)||(28226621-28227043)
chr6 (1-208)||(28325367-28325574)
chr6 (1-211)||(28242687-28242897)
chr6 (1-208)||(28234450-28234657)
chr6 (1-208)||(28185252-28185459)
chr6 (1-208)||(28181000-28181207)
chr6 (1-204)||(28297807-28298010)
chr6 (1-204)||(28514063-28514266)
chr6 (1-184)||(28139451-28139634)
chr6 (6-199)||(27724944-27725137)
chr6 (1-196)||(27593114-27593309)
chr6 (1-164)||(29825957-29826120)
chr6 (1-118)||(26342028-26342145)
chr6 (1-196)||(27678844-27679039)
chr6 (1-199)||(26802337-26802535)
chr6 (1-199)||(26884058-26884256)
chr6 (1-199)||(27604799-27604997)
chr6 (1-199)||(27611096-27611294)
chr6 (1-199)||(27718473-27718671)
chr6 (26-199)||(26622871-26623044)
chr6 (26-199)||(26728849-26729022)
chr6 (1-116)||(28149916-28150030)
chr6 (12-199)||(28786173-28786360)
chr6 (12-199)||(28792294-28792481)
chr6 (33-196)||(31284186-31284349)
chr6 (1-163)||(27698588-27698750)
chr6 (6-199)||(28781034-28781227)
chr6 (27-199)||(27229127-27229299)
chr6 (1-124)||(26893565-26893688)
chr6 (1-184)||(27677708-27677891)
chr6 (1-178)||(26646395-26646572)
chr6 (1-178)||(26752363-26752540)
chr6 (27-127)||(25579686-25579786)
chr6 (27-199)||(27338185-27338357)
chr6 (27-199)||(27398925-27399097)
chr6 (75-206)||(27214305-27214436)
chr6 (75-206)||(27234792-27234923)
chr6 (1-208)||(28098463-28098670)
chr6 (26-196)||(26861514-26861684)
chr6 (34-127)||(25481709-25481802)
chr6 (69-206)||(26811397-26811534)
chr6 (230-306)||(28180892-28180966)
chr6 (230-306)||(28185144-28185218)
chr6 (27-127)||(26142832-26142932)
chr6 (45-124)||(26937064-26937143)
chr6 (13-196)||(27706508-27706691)
chr6 (69-206)||(25071547-25071684)
chr6 (27-163)||(27531317-27531453)
chr6 (63-127)||(26949628-26949692)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-208)||(58376-58583)
[»] chr4 (6 HSPs)
chr4 (29-211)||(5091076-5091258)
chr4 (1-199)||(18724166-18724364)
chr4 (1-199)||(18731585-18731783)
chr4 (1-176)||(18699481-18699656)
chr4 (1-199)||(18655558-18655756)
chr4 (1-199)||(18679648-18679846)
[»] scaffold0349 (2 HSPs)
scaffold0349 (12-199)||(3527-3714)
scaffold0349 (6-163)||(14454-14611)
[»] scaffold1254 (1 HSPs)
scaffold1254 (12-199)||(22-209)
[»] scaffold0419 (1 HSPs)
scaffold0419 (12-199)||(7420-7607)
[»] scaffold0277 (2 HSPs)
scaffold0277 (26-199)||(4790-4963)
scaffold0277 (12-199)||(13737-13924)
[»] chr2 (2 HSPs)
chr2 (1-208)||(3279574-3279781)
chr2 (66-199)||(17993843-17993976)
[»] chr8 (1 HSPs)
chr8 (35-208)||(31903737-31903910)
[»] chr1 (1 HSPs)
chr1 (1-177)||(268438-268614)
[»] chr5 (1 HSPs)
chr5 (35-161)||(16688944-16689070)


Alignment Details
Target: scaffold0038 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 27541 - 27119
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||  |||||| | ||||||||| |||||||||||||||||| |    
T  27541 aagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctctct 27442  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
     ||||||| ||| ||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  27441 atcatcaaagaatgtgtgaattcccttcttacaaagatcactgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacg 27342  T
Q  201 tcataggt------------aaaggaagaannnnnnnagatggatgattcaagcatagccatatgagaatatagaattaaaaggaagtagtaagagtatg 288  Q
    ||||||||             |||||||||       ||| |||||||| ||||||||||||||||||||| |||||  |||||||||| |||| |||||    
T  27341 tcataggtgaatccataagagaaggaagaagggggagagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaataagtgtatg 27242  T
Q  289 agaattaagaatgtggatatatagggcttcaaactaaaagagtcaacacggttgcagttaagagaacatccattgaccagagatcattgggagtgaagct 388  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||  |||||||||||| ||| ||||||||||||| ||    
T  27241 agaattaagaatgtggatatatagggcttcaaactaaaaaaggcaactcggttgcacttaagagaggatccattgaccaaagaccattgggagtgaaact 27142  T
Q  389 tccgtcaaatttcatatattatc 411  Q
    || |||| ||||||||| |||||    
T  27141 tctgtcacatttcatatcttatc 27119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 116889 - 116682
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||| |||||    
T  116889 aagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggtcttt 116790  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  116789 gtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacg 116690  T
Q  201 tcataggt 208  Q
    ||||||||    
T  116689 tcataggt 116682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 43059 - 42849
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| |||||||||| |||||||||| |||| ||| |    
T  43059 aagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattttgtcacctcctggaagttctct 42960  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||     
T  42959 gtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaagaca 42860  T
Q  201 tcataggtaaa 211  Q
    |||||||||||    
T  42859 tcataggtaaa 42849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 34818 - 34611
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| ||||||||||| || ||||||||||||||  |    
T  34818 aagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccct 34719  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||||||||||||| | |||||||| | || |||| || | ||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||    
T  34718 gtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacg 34619  T
Q  201 tcataggt 208  Q
    ||||||||    
T  34618 tcataggt 34611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 28227043 - 28226621
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |||  |||||| | ||||||||| |||||||||||||||||| |    
T  28227043 aagaagcataattgatagacaagacaggaatgaaaatcctagattcttcaatgaccttgaaaagtgatgatgttatttcatcacctccttgaagctctct 28226944  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
     ||||||| ||| ||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  28226943 atcatcaaagaatgtgtgaattcccttcttacaaagatcactgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacacg 28226844  T
Q  201 tcataggt------------aaaggaagaannnnnnnagatggatgattcaagcatagccatatgagaatatagaattaaaaggaagtagtaagagtatg 288  Q
    ||||||||             |||||||||       ||| |||||||| ||||||||||||||||||||| |||||  |||||||||| |||| |||||    
T  28226843 tcataggtgaatccataagagaaggaagaagggggagagacggatgattgaagcatagccatatgagaatagagaatagaaaggaagtaataagtgtatg 28226744  T
Q  289 agaattaagaatgtggatatatagggcttcaaactaaaagagtcaacacggttgcagttaagagaacatccattgaccagagatcattgggagtgaagct 388  Q
    ||||||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||  |||||||||||| ||| ||||||||||||| ||    
T  28226743 agaattaagaatgtggatatatagggcttcaaactaaaaaaggcaactcggttgcacttaagagaggatccattgaccaaagaccattgggagtgaaact 28226644  T
Q  389 tccgtcaaatttcatatattatc 411  Q
    || |||| ||||||||| |||||    
T  28226643 tctgtcacatttcatatcttatc 28226621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28325574 - 28325367
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||| |||||    
T  28325574 aagaagcataattgatagacaaaataggaatgaaaatcctagactcttcaatggccttgaaaagtgacggtgttatttcgtcacctcgttgaaggtcttt 28325475  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28325474 gtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacg 28325375  T
Q  201 tcataggt 208  Q
    ||||||||    
T  28325374 tcataggt 28325367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28242897 - 28242687
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| |||||||||| |||||||||| |||| ||| |    
T  28242897 aagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttattttgtcacctcctggaagttctct 28242798  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||     
T  28242797 gtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaagaca 28242698  T
Q  201 tcataggtaaa 211  Q
    |||||||||||    
T  28242697 tcataggtaaa 28242687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28234657 - 28234450
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| ||||||||||| || ||||||||||||||  |    
T  28234657 aagaagcataattgatagacaagacaggaatgaaaatcctagactcttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccct 28234558  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||||||||||||| | |||||||| | || |||| || | ||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||    
T  28234557 gtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacacg 28234458  T
Q  201 tcataggt 208  Q
    ||||||||    
T  28234457 tcataggt 28234450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28185459 - 28185252
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||  |||||| | ||||||||| |||||||||||||||||| |    
T  28185459 aagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctct 28185360  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||| |||||||| || |||||||| | || |||| || | | ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  28185359 gtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaacgataacgagtgtcactacctctaaagctaaggaacacg 28185260  T
Q  201 tcataggt 208  Q
    ||||||||    
T  28185259 tcataggt 28185252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28181207 - 28181000
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||  |||||| | ||||||||| |||||||||||||||||| |    
T  28181207 aagaagcataattgatagacaagacgggaatgaaaatcctagactcttcaatggccttgaaaagtgatgatgttatttcttcacctccttgaagctctct 28181108  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||| |||||||| || |||||||| | || |||| || | | ||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||    
T  28181107 gtcatccatgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaaccataacgagtgtcaccacctctaaagctaaggaacgcg 28181008  T
Q  201 tcataggt 208  Q
    ||||||||    
T  28181007 tcataggt 28181000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 28297807 - 28298010
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||| |||| |||| ||||||||||||||||| ||||||||||   |||  |||||| |||||||||||||||||||||| ||||||| |    
T  28297807 aagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaagctctct 28297906  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||  || |  |||||||||||||||||||| ||||| |||    
T  28297907 gtcatcaatgaaggtgcgaattcccttcctacaaagatctttgtggagatttccaataaaactgtagcgtgtgtcactacctctaaaacttaggaaaacg 28298006  T
Q  201 tcat 204  Q
    ||||    
T  28298007 tcat 28298010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 28514266 - 28514063
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||| |||| |||| ||||||||||||||||| ||||||||||   |||  |||||| |||||||||||||||||||||| ||||||| |    
T  28514266 aagaagcataattggtagataagacaggaatgaaaatcctagtctcttcaatgtgcttgaaaagtgatggtgttatttcgtcacctcctttaagctctct 28514167  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||  || |  |||||||||||||||||||| ||||| |||    
T  28514166 gtcatcaatgaaggtgcgaattcccttcctacaaagatctttgtggagatttccaataaaactgtagcgtgtgtcactacctctaaaacttaggaaaacg 28514067  T
Q  201 tcat 204  Q
    ||||    
T  28514066 tcat 28514063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 28139634 - 28139451
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| ||||| || || | ||| |||||||||||||| ||||||||||||||    |||||||||| ||||||||||||||||||||||||  |    
T  28139634 aagaggcatagttgatggaaaacacagggatgaaaatcctagattcttcaatggcttttacgagtgacggtgatatttcgtcacctccttgaagctccct 28139535  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctct 184  Q
     |||||||| || ||| | |||||    | ||||||| ||||||||||||||||||| |||||  ||| ||||||||| |||||    
T  28139534 atcatcaataaaagtgtggattccacagtcacgaagagctttgtagagatttccagtgaaaccgaaacgagtgtcactgcctct 28139451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 27724944 - 27725137
Alignment:
Q  6 gcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcat 105  Q
    ||||| |||||||| || | |||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||    
T  27724944 gcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcat 27725043  T
Q  106 caatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||||||||  | |||||||| | |  |||| | |||||||||||||| |||||||| |  | ||||||| | || |||||||||||||||||    
T  27725044 caatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 27725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27593114 - 27593309
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||| |  |||| ||||||  | ||    
T  27593114 aagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatttcctctttgaagaccatt 27593213  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaa 196  Q
    ||||||||||||||||   |||||||| | |  |||| | ||||||||||| || || ||||| || | ||||||||| ||||| ||||| |||||    
T  27593214 gtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaa 27593309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 29826120 - 29825957
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||||||| |||| || |||||||||   |||||||| |||| ||| || ||   |||||| ||||| |||||||| |||| ||||||||||||    
T  29826120 aagaagcataattggtagagaaaataggaatggctatcctagattcttgaattgccttcacaagtgagggtgtgatttcgtcccctctttgaagctcttt 29826021  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaacca 164  Q
    ||||||||||||||||||||||  ||| | |   ||| ||||||||||||| || |||||||||    
T  29826020 gtcatcaatgaaggtgcgaattttcttgtcagttagagctttgtagagattgccggtaaaacca 29825957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 26342028 - 26342145
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||| ||||| || || || |||||||||||||| ||||||||||||||||||  ||||||  |||| |||| ||||||||| ||||||||  |    
T  26342028 aagaagcatagttgattgagaaaattggaatgaaaatcctggactcttcaatggctttgacaagtgattgtgtgattttgtcacctccatgaagctccct 26342127  T
Q  101 gtcatcaatgaaggtgcg 118  Q
     |||||||||||||||||    
T  26342128 atcatcaatgaaggtgcg 26342145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 27679039 - 27678844
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||| || |||| ||||||  | ||    
T  27679039 aagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatctcctctttgaagaccatt 27678940  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaa 196  Q
     | |||||||||||||   |||||||| | |  |||| | ||||||||||| || || ||||| || | ||||||||| ||||| ||||| |||||    
T  27678939 cttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaa 27678844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26802535 - 26802337
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||| ||||| ||||||||||| |||   ||||| ||||| ||||| || |||| |||||| || ||    
T  26802535 aagaggcatagttgatagaaaacacaggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcatt 26802436  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    |||||||||||||||  | |||||||| | |  |||| | ||||||||||| || |||||||| || | ||||||| | || |||||||| ||||||||    
T  26802435 gtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacac 26802337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26884256 - 26884058
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| ||| |||| || || ||||| ||||| ||||| ||||||||||| |||   ||||| ||||| ||||||   |||| | |||| |  ||    
T  26884256 aagatgcatagttggtagaaaatattggaataaaaattctagattcttcaatggccttgatgagtgatggtgtgatttcgcttcctcttggaagatgatt 26884157  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
     ||||||||||||||| | |||||||| |||  |||| | ||||||||||||||||| |||||||| | ||||||||| ||||| ||||| ||||||||    
T  26884156 atcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacac 26884058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27604799 - 27604997
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| |||||||| || || |||||||| ||| ||||||  ||||| ||||| || |||| | |||| || ||    
T  27604799 aagaggcatatttgatagaaaacacaggaataaaaatcctggattcatcaatggccttgagaagtgctggtgtgatttcatctcctcttcgaagatcatt 27604898  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
     ||||||||||||||  |||||||||| | |  |||| | ||||||||||| || |||||||| || | ||||||| | || |||||||||||||||||    
T  27604899 ttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacac 27604997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27611096 - 27611294
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||||| || |||| | |||| || ||    
T  27611096 aagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctcttggaagatcatt 27611195  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    |||||||||||||||  | |||||||| | |  |||| | |||||||||||||| |||||||| |  | ||||||| | || |||||||| ||||||||    
T  27611196 gtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 27611294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 27718473 - 27718671
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||||| || |||| |||||| || ||    
T  27718473 aagaggcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcatt 27718572  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    |||||||||||||||  | |||||||| | |  |||| | |||||||||||||| |||||||  |  | ||||||| | || |||||||| ||||||||    
T  27718573 gtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacac 27718671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 26623044 - 26622871
Alignment:
Q  26 aggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccc 125  Q
    |||||| ||||||||||||||||| || || |||  |||||| ||| | |||||||| |||| |||||| ||    ||||||||||||||| | ||||||    
T  26623044 aggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattccc 26622945  T
Q  126 ttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    || | |  |||| | ||||||||||||||||| ||||| || | ||||||||| ||||| ||||| ||||||||    
T  26622944 ttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacac 26622871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 26729022 - 26728849
Alignment:
Q  26 aggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccc 125  Q
    |||||| ||||||||||||||||| || || |||  |||||| ||| | |||||||| |||| |||||| ||    ||||||||||||||| | ||||||    
T  26729022 aggaataaaaatcctagactcttcgatagcattgtcaagtgatggtttgatttcgtcccctctttgaagttcacgatcatcaatgaaggtgtggattccc 26728923  T
Q  126 ttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    || | |  |||| | ||||||||||||||||| ||||| || | ||||||||| ||||| ||||| ||||||||    
T  26728922 ttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacac 26728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28150030 - 28149916
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||| ||| |||||||| ||||| |||||||||||||| |||||||||||||| ||| | ||||| ||||| |||||||| |||| || ||||||  |    
T  28150030 aagaagtatagttgatagagaagattggaatgaaaatcctggactcttcaatggccttgag-agtgatggtgtgatttcgtcccctcgttaaagctccgt 28149932  T
Q  101 gtcatcaatgaaggtg 116  Q
     |||||||||||||||    
T  28149931 atcatcaatgaaggtg 28149916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 28786360 - 28786173
Alignment:
Q  12 ttgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatga 111  Q
    |||||||| || | |||||| ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||||||||    
T  28786360 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 28786261  T
Q  112 aggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||    |||||||| | |  |||| | |||||||||||||| |||||||| |  | ||||||| | || |||||||| ||||||||    
T  28786260 aggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28786173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 28792481 - 28792294
Alignment:
Q  12 ttgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatga 111  Q
    |||||||| || | |||||| ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||||||||    
T  28792481 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 28792382  T
Q  112 aggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||    |||||||| | |  |||| | |||||||||||||| |||||||| |  | ||||||| | || |||||||| ||||||||    
T  28792381 aggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28792294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 31284349 - 31284186
Alignment:
Q  33 aaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttac 132  Q
    ||||||||||||||||||||||| |||   ||||| ||||| ||||| || |||| |||||| ||  | ||||||||||||||| | |||||||| | |     
T  31284349 aaaatcctagactcttcaatggcattgtcgagtgatggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcag 31284250  T
Q  133 gaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaa 196  Q
     |||| | ||||||||||| || || |||||||| | ||||||||| || || |||||||||||    
T  31284249 taagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaa 31284186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 27698588 - 27698750
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||| ||| || | |||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||||| || |||| |||||| || ||    
T  27698588 aagatgcatagttgagagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcatt 27698687  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaacc 163  Q
    |||||||||||||||  | |||||||| | |  |||| | |||||||||||||| ||||||||    
T  27698688 gtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaacc 27698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 28781227 - 28781034
Alignment:
Q  6 gcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcat 105  Q
    ||||| |||||||| || | |||||| ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||    
T  28781227 gcatagttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcat 28781128  T
Q  106 caatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||||||||    |||||||| | |  |||| | ||||||||||| || |||||||| |  | ||||||| | || |||||||| ||||||||    
T  28781127 caatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 28781034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 27229299 - 27229127
Alignment:
Q  27 ggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccct 126  Q
    ||||| ||||||| ||| || |||||||| |||   ||||| ||||| |||||||| |||| |||||| || |||||||||||||||||  | |||||||    
T  27229299 ggaataaaaatccgagattcgtcaatggccttgacgagtgatggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggtatggattccct 27229200  T
Q  127 tcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    | | |  |||| | ||||||||||| || |||||||| |  | ||||||| | || |||||||||||||||||    
T  27229199 tgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 27229127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 26893565 - 26893688
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||| |||||||| | ||  |||||| | ||| ||||||||||||| || |||  |||||| ||||  |||||||||||||  ||||||||| |    
T  26893565 aagaagcatagttgatagagaggactggaatgtatatcatagactcttcaattgccttgataagtgatggtgagatttcgtcacctctatgaagctctgt 26893664  T
Q  101 gtcatcaatgaaggtgcgaattcc 124  Q
     ||||||||||||||| |||||||    
T  26893665 atcatcaatgaaggtgtgaattcc 26893688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 27677708 - 27677891
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | || ||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||| || |||| |||||| || |     
T  27677708 aagaggcatagttgatagaaaacacagcaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccctctttgaagttcatg 27677807  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctct 184  Q
     |  |||||||||||| | |||||||| | |  |||| | ||||||||||| || || ||||| || | ||||||||| |||||    
T  27677808 attgtcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctct 27677891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 26646572 - 26646395
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||||||||| ||||||||||| |||   ||||| ||||| ||||| || ||||  | ||| ||       
T  26646572 aagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcaca 26646473  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcact 178  Q
     ||||||||||||||| |||||||||| | |  |||| | |||||||||| |||||||||||| | || |||||||||    
T  26646472 atcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcact 26646395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 26752540 - 26752363
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||||||||| ||||||||||| |||   ||||| ||||| ||||| || ||||  | ||| ||       
T  26752540 aagaggcatagttgatagaaaacacaggaataaaaatcctagattcttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcaca 26752441  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcact 178  Q
     ||||||||||||||| |||||||||| | |  |||| | |||||||||| |||||||||||| | || |||||||||    
T  26752440 atcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcact 26752363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 25579786 - 25579686
Alignment:
Q  27 ggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccct 126  Q
    ||||| ||||||||||| ||||||||||| |||  |||||| ||||| ||||| || |||| |||||| || || ||||||| |||||| ||||||||||    
T  25579786 ggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatcattatcatcaaagaaggtacgaattccct 25579687  T
Q  127 t 127  Q
    |    
T  25579686 t 25579686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 27338185 - 27338357
Alignment:
Q  27 ggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccct 126  Q
    ||||| ||||||||||||||||||||||| |||  |||||| |||||  |||| || |||| || ||| || |||||||||||||||||    |||||||    
T  27338185 ggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattccct 27338284  T
Q  127 tcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    | | |  |||| | ||||||||||| || |||||||| |||  ||||||| |  | |||||||| ||||||||    
T  27338285 tgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacac 27338357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 27398925 - 27399097
Alignment:
Q  27 ggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccct 126  Q
    ||||| ||||||||||||||||||||||| |||  |||||| |||||  |||| || |||| || ||| || |||||||||||||||||    |||||||    
T  27398925 ggaatcaaaatcctagactcttcaatggccttgacaagtgatggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattccct 27399024  T
Q  127 tcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    | | |  |||| | ||||||||||| || |||||||| |||  ||||||| |  | |||||||| ||||||||    
T  27399025 tgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacac 27399097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 206
Target Start/End: Complemental strand, 27214436 - 27214305
Alignment:
Q  75 atttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgt 174  Q
    |||||||||||||  |||||||| ||||||||||||||||| || ||||| || | || |||| |||| |||||||| || || ||||| |  | |||||    
T  27214436 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgt 27214337  T
Q  175 cactacctctaaaactaaggaacacgtcatag 206  Q
    |  |||| || ||||||| |||||||||||||    
T  27214336 cggtacccctgaaactaatgaacacgtcatag 27214305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 27234792 - 27234923
Alignment:
Q  75 atttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgt 174  Q
    |||||||||||||  |||||||| ||||||||||||||||| || ||||| || | || |||| |||| |||||||| || || ||||| |  | |||||    
T  27234792 atttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgt 27234891  T
Q  175 cactacctctaaaactaaggaacacgtcatag 206  Q
    |  |||| || ||||||| |||||||||||||    
T  27234892 cggtacccctgaaactaatgaacacgtcatag 27234923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 28098463 - 28098670
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||| ||  |||| ||||  ||||| |||||||| |||||||| ||||| |||  ||| ||  |||| |||   |||||| | ||||| |||||    
T  28098463 aagaagcatagttcttagagaagaccggaattaaaatcctggactcttcgatggccttgacaagggattgtgtgattctatcaccttcatgaagatcttt 28098562  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
     |  |||||||||||||| | |||    | || |||| |||||||||||||||||||||||||||| | ||||||  | || |||||| |||| ||||||    
T  28098563 atggtcaatgaaggtgcggactcctccgtcacaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacg 28098662  T
Q  201 tcataggt 208  Q
    ||||||||    
T  28098663 tcataggt 28098670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 26861684 - 26861514
Alignment:
Q  26 aggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccc 125  Q
    |||||||||||| ||||||||||||||||| |||   |||||   | | ||||| || |||| |||||| ||    ||||| ||||||||| ||||||||    
T  26861684 aggaatgaaaattctagactcttcaatggcattgtcgagtgatcttttgatttcatcccctctttgaagttcacgatcatccatgaaggtgtgaattccc 26861585  T
Q  126 ttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaa 196  Q
    || | |  |||| | ||||||||||| || ||||||||||| | ||||||||| ||||| ||||| |||||    
T  26861584 ttgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaa 26861514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 25481802 - 25481709
Alignment:
Q  34 aaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccctt 127  Q
    |||||||||| ||||||||||| |||  |||||| ||||| ||||| || |||| |||||| || || ||||||||||| || |||||||||||    
T  25481802 aaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttgaagatcattttcatcaatgaaagtacgaattccctt 25481709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 26811534 - 26811397
Alignment:
Q  69 ggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataac 168  Q
    ||||| |||||||||||||  |||||||| ||||||||||||||||| || ||||| || | || |||| |||| |||||||  || || || ||| | |    
T  26811534 ggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagatgaccggtgaagccagatc 26811435  T
Q  169 aagtgtcactacctctaaaactaaggaacacgtcatag 206  Q
     ||||||  |||| || ||||||| |||||||||||||    
T  26811434 gagtgtcgatacccctgaaactaatgaacacgtcatag 26811397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 28180966 - 28180892
Alignment:
Q  230 ggatgattcaagcatagccatatgagaatatagaattaaaaggaagtagtaagagtatgagaattaagaatgtggat 306  Q
    |||||||| ||||||||||||  ||||||| ||||| |||||||||||  || |||||||||| |||||||||||||    
T  28180966 ggatgattgaagcatagccat--gagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtggat 28180892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 28185218 - 28185144
Alignment:
Q  230 ggatgattcaagcatagccatatgagaatatagaattaaaaggaagtagtaagagtatgagaattaagaatgtggat 306  Q
    |||||||| ||||||||||||  ||||||| ||||| |||||||||||  || |||||||||| |||||||||||||    
T  28185218 ggatgattgaagcatagccat--gagaatagagaataaaaaggaagtaagaatagtatgagaagtaagaatgtggat 28185144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 26142932 - 26142832
Alignment:
Q  27 ggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccct 126  Q
    ||||| ||||||||||| ||||||||||| |||  |||||| ||||| ||||| || |||| || ||| || || ||||||||||| || ||||||||||    
T  26142932 ggaataaaaatcctagattcttcaatggccttgacaagtgatggtgtgatttcatctcctctttcaagatcattatcatcaatgaaagtacgaattccct 26142833  T
Q  127 t 127  Q
    |    
T  26142832 t 26142832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 26937143 - 26937064
Alignment:
Q  45 tcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcc 124  Q
    |||||||| || |||  |||||| ||||| ||||| || ||||| || ||||| ||||||||||||||||||||||||||    
T  26937143 tcttcaattgccttgacaagtgatggtgtgatttcttctcctccatggagctccttgtcatcaatgaaggtgcgaattcc 26937064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 27706508 - 27706691
Alignment:
Q  13 tgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaa 112  Q
    ||||||| || | |||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||| || | || |||||| || |  |  ||||||||    
T  27706508 tgatagaaaacacaggaataaaaatcctagactcttcaatggccttgagaagtgatggtgtgatttcatcccttctttgaagttcatgattgtcaatgaa 27706607  T
Q  113 ggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaa 196  Q
    |||| | |||||||| | |  || | | ||||||||||| || || ||||| || | ||||||||  ||||| ||||| |||||    
T  27706608 ggtgtggattcccttgtcatcaaaagccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaa 27706691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 25071684 - 25071547
Alignment:
Q  69 ggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataac 168  Q
    ||||| |||||||||||||  | |||||||||||||||||| |||||| | ||||| || | |  |||| |||| || ||||| || ||||||||  | |    
T  25071684 ggtgtgatttcgtcacctctcttaagctctttgtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaaccgaatc 25071585  T
Q  169 aagtgtcactacctctaaaactaaggaacacgtcatag 206  Q
     ||||||  |||| || ||||||| |||||||||||||    
T  25071584 gagtgtcggtacccctgaaactaatgaacacgtcatag 25071547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 27531317 - 27531453
Alignment:
Q  27 ggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccct 126  Q
    ||||| ||||||||||| | ||||||||| ||    ||||| ||||| ||||| || |||| |||||| || |||||||||||||||||    |||||||    
T  27531317 ggaataaaaatcctagatttttcaatggcattttttagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattccct 27531416  T
Q  127 tcttacgaagatctttgtagagatttccagtaaaacc 163  Q
    | | |  |||| | |||||||||||||| ||||||||    
T  27531417 tgtcagtaagagccttgtagagatttccggtaaaacc 27531453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 26949692 - 26949628
Alignment:
Q  63 agtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccctt 127  Q
    ||||| ||||| ||||||||||||   |||||||| || |||||||||||||| || ||||||||    
T  26949692 agtgaaggtgtgatttcgtcacctttctgaagctccttatcatcaatgaaggttcggattccctt 26949628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 58376 - 58583
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||| |||||| |||  |||||| |||||||||||||||||||||||||||||| |    
T  58376 aagaagcatagttgatagacaagacgggaatgaaaatcctagactctttaatggccttgaaaagtgatggtgttatttcgtcacctccttgaagctctct 58475  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
    |||||| |||||||| || |||||||| | || |||| || ||||||||||||||||||||||||| | |||||||| ||||||||| ||||||||||||    
T  58476 gtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaaccatagcgagtgtcacaacctctaaagctaaggaacacg 58575  T
Q  201 tcataggt 208  Q
    | ||||||    
T  58576 tgataggt 58583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 5091076 - 5091258
Alignment:
Q  29 aatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttc 128  Q
    ||||| |||| |||| |||| |||||| ||| |||||||||||||||||| ||| ||||  ||||||||| ||||||||||||||||| ||||||||||     
T  5091076 aatgacaatcttagattcttgaatggccttgagaagtgacggtgttatttggtctcctcgctgaagctctctgtcatcaatgaaggtgtgaattcccttg 5091175  T
Q  129 ttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacgtcataggtaaa 211  Q
      ||| ||| |||  |||||||||||||||||||| |||| ||||||  | |||||||||||||| || ||||| ||||||||    
T  5091176 acacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaaactaagaaagacgtcgtaggtaaa 5091258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18724166 - 18724364
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | ||||||||| |||||||||||||||||||| |||   ||||| ||| | ||||| || |||| ||| || ||       
T  18724166 aagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacg 18724265  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    |||||||||||||||| | |||||||| | |  |||| | ||||||||||  ||||||||||| | || ||||||||| || || || || ||||||||    
T  18724266 gtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacac 18724364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18731585 - 18731783
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | ||||||||| |||||||||||||||||||| |||   ||||| ||| | ||||| || |||| ||| || ||       
T  18731585 aagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacg 18731684  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    |||||||||||||||| | |||||||| | |  |||| || |||||||||  ||||||||||| | || ||||||||| || || || || ||||||||    
T  18731685 gtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacac 18731783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 18699481 - 18699656
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | ||||||||| |||||||||||||||||||| |||   ||||| ||| | ||||| || || | ||| || ||       
T  18699481 aagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatccccactttgcaggtcacg 18699580  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtca 176  Q
    |||||||||||||||| | |||||||| | |  |||| ||||||||||||  ||||||||||| | || |||||||    
T  18699581 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtca 18699656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18655558 - 18655756
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| || ||||||||||||| |||||| |||   ||||| ||| | ||||| || || | ||| |||||       
T  18655558 aagaggcatagttgatagaaaacacaggaataaagatcctagactcttgaatggcattgtcgagtgatggtttgatttcatccccactttgcagctcacg 18655657  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    |||||||||||||||| | |||||||| | |  |||| ||||||||||||  ||||||||||| | || ||||||||| || || || || ||||||||    
T  18655658 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacac 18655756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18679648 - 18679846
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | ||||||||| |||||||||||||||||||| |||   ||||| ||| | ||||| || |||| ||| || ||       
T  18679648 aagaggcatagttgatagaaaacacaggaatgaagatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgcaggtcacg 18679747  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    |||||||||||||||| | ||||| || | |  |||| | ||||||||||  ||||||||||| | || ||||||||| || || || || ||||||||    
T  18679748 gtcatcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacac 18679846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 3527 - 3714
Alignment:
Q  12 ttgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatga 111  Q
    |||||||| || | |||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||||||||    
T  3527 ttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 3626  T
Q  112 aggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||  | |||||||| | |  |||| | |||||||||||||| |||||||| |  | ||||||| | || |||||||||||||||||    
T  3627 aggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacac 3714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 14454 - 14611
Alignment:
Q  6 gcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcat 105  Q
    ||||| |||||||| || | |||||| ||||||||||| || |||||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||    
T  14454 gcatagttgatagaaaacacaggaataaaaatcctagattcatcaatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcat 14553  T
Q  106 caatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaacc 163  Q
    ||||||||||  | |||||||| | |  |||| | |||||||||||||| ||||||||    
T  14554 caatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaacc 14611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 22 - 209
Alignment:
Q  12 ttgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatga 111  Q
    |||||||| || | |||||| ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||||||||    
T  22 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 121  T
Q  112 aggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||    |||||||| | |  |||| | ||||||||||| || |||||||| |  | ||||||| | || |||||||||||||||||    
T  122 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 7607 - 7420
Alignment:
Q  12 ttgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatga 111  Q
    |||||||| || | |||||| ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||||||||    
T  7607 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 7508  T
Q  112 aggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||    |||||||| | |  |||| | ||||||||||| || |||||||| |  | ||||||| | || |||||||||||||||||    
T  7507 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacac 7420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 4790 - 4963
Alignment:
Q  26 aggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattccc 125  Q
    |||||| ||||||||||| || |||||||| ||||| || || ||||| ||||| || |||| |||||| || |||||||||||||||||    ||||||    
T  4790 aggaataaaaatcctagattcatcaatggccttgcggagggatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattccc 4889  T
Q  126 ttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    || | |  |||| | |||||||||||||| |||||||| |  | ||||||| | || |||||||| ||||||||    
T  4890 ttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacac 4963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 13737 - 13924
Alignment:
Q  12 ttgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatga 111  Q
    |||||||| || | |||||| ||||||||||| ||||| ||||| ||| | ||||| ||||| ||||| || |||| |||||| || |||||||||||||    
T  13737 ttgatagaaaacacaggaataaaaatcctagattcttcgatggccttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatga 13836  T
Q  112 aggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacac 199  Q
    ||||    |||||||| | |  |||| | ||||||||||| || |||||||| |  | ||||||| | || |||||||| ||||||||    
T  13837 aggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacac 13924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 3279781 - 3279574
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||||||||| |||||||| ||||  ||||| |||||| | |||||||| ||||| |||  ||||||  |||| ||||| |||||||| ||||||||  |    
T  3279781 aagaagcatagttgatagagaagaccggaataaaaatcatggactcttcgatggccttgacaagtgattgtgtgatttcatcacctccatgaagctccct 3279682  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacg 200  Q
     ||||||||||||||||  | |||    | ||  | | || | ||||||||||||||||||||||| | ||||||| | || |||||||| | ||| |||    
T  3279681 atcatcaatgaaggtgcagaatccaccgtcacttaaagctctatagagatttccagtaaaaccatagcgagtgtcagtgcccctaaaactcaagaatacg 3279582  T
Q  201 tcataggt 208  Q
    ||||||||    
T  3279581 tcataggt 3279574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 17993843 - 17993976
Alignment:
Q  66 gacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccat 165  Q
    |||||||| ||||| |||||||  ||||||||||||||||| |||||||| ||||||||||| | |  |||| |||| |||||||| || || |||||||    
T  17993843 gacggtgtgatttcatcacctctctgaagctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccat 17993942  T
Q  166 aacaagtgtcactacctctaaaactaaggaacac 199  Q
    | | ||| ||  |||| || ||||||| ||||||    
T  17993943 atcgagtatcggtacccctgaaactaatgaacac 17993976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 31903910 - 31903737
Alignment:
Q  35 aatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttacga 134  Q
    |||||||||||||||||| || |    |||||| ||||| ||||| |  |||| |||||| ||||  || ||||| |||||| | |||||||| | |  |    
T  31903910 aatcctagactcttcaattgcctctaaaagtgatggtgtgatttcatgtcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataa 31903811  T
Q  135 agatctttgtagagatttccagtaaaaccataacaagtgtcactacctctaaaactaaggaacacgtcataggt 208  Q
    ||| |||||||||||||||||||||||||||| | ||||||    |||||||| || |||||||| || |||||    
T  31903810 agagctttgtagagatttccagtaaaaccatagcgagtgtctaagcctctaaagctgaggaacacatcgtaggt 31903737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 268438 - 268614
Alignment:
Q  1 aagaagcataattgatagacaagataggaatgaaaatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctcttt 100  Q
    |||| ||||| |||||||| || | |||||| ||||||||||||||||||||||| |||   ||||| ||| | ||||| || |||| |||||| ||       
T  268438 aagaggcatagttgatagaaaacacaggaataaaaatcctagactcttcaatggcattgtcgagtgatggtttgatttcatcccctctttgaagttcacg 268537  T
Q  101 gtcatcaatgaaggtgcgaattcccttcttacgaagatctttgtagagatttccagtaaaaccataacaagtgtcac 177  Q
     ||||||||||||||| | |||||||| | |  |||| | ||||||||||  ||| ||||||| | || ||||||||    
T  268538 atcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccaataaaaccctcacgagtgtcac 268614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 16689070 - 16688944
Alignment:
Q  35 aatcctagactcttcaatggctttgcgaagtgacggtgttatttcgtcacctccttgaagctctttgtcatcaatgaaggtgcgaattcccttcttacga 134  Q
    |||||| || |||||||| || |||  |||||| ||||| |||| ||||||||  ||||| || |||||||||||||||   || |||||||| | ||      
T  16689070 aatccttgagtcttcaattgccttgataagtgatggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacat 16688971  T
Q  135 agatctttgtagagatttccagtaaaa 161  Q
    ||| ||||||| ||||| |||||||||    
T  16688970 agagctttgtacagattaccagtaaaa 16688944  T

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