View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_13 (Length: 405)
Name: NF7802_low_13
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 21 - 392
Target Start/End: Complemental strand, 41082357 - 41081987
Alignment:
| Q |
21 |
agttacatagttccttttcccttttcaatctttgtttatgaaatggatatatcagtttgagcttattttcaagtgagcaagtgaatagatttatcaatta |
120 |
Q |
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| T |
41082357 |
agttacatagttccttttcccttttcgatctttgtttatgaaatggatatatcagtttgagcttattttcaagtgagcaagtgaatagatttatcaatta |
41082258 |
T |
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| Q |
121 |
aatgagttgataccacaatatagctattggagtgaggatgaattaatatgttctcttatttgctcgctaccatatattacatgttaatcaaccataagga |
220 |
Q |
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| T |
41082257 |
a-tgagttgatagcacaatatagctattggagtgaggatgaattaatatgttctcttatttgctcgctaccttatattacatgttaatcaaccataagga |
41082159 |
T |
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| Q |
221 |
aattccaacatacagaatagaaccatgtgtagtcatcttctggatctactattgaagagttgtgttatttgaaagtgtaattgatctggatttagttgtt |
320 |
Q |
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| T |
41082158 |
aattccaacatacagaatagaaccatgtgtagtcatcttctggatctactattgaagagttgtgttatttgaaagtgcaattgatctggatttagttgtt |
41082059 |
T |
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| Q |
321 |
atgcaaaatggaatctatgattagacatataatctattgtttggttgtagcatgttagctaaatacaaaaat |
392 |
Q |
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| T |
41082058 |
atgcaaaatggaatctatgattagacatataatctattgtttggttgtagcatgttagctaaatacaaaaat |
41081987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 74 - 394
Target Start/End: Complemental strand, 41104991 - 41104685
Alignment:
| Q |
74 |
agtttgagcttattttcaagtgagcaagtgaatagatttatcaattaaatgagttgataccacaatatagctattggagtgaggatgaa---ttaatatg |
170 |
Q |
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| T |
41104991 |
agtttgagcttatttttaagtgagcaagtgaatatatttatcgagt---tgatatggtaccacaatattgatattggagtgaggatgaacaatgaacatg |
41104895 |
T |
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| Q |
171 |
ttctcttatttgctcgctaccatatattacatgttaatcaaccataaggaaattccaacatacagaatagaaccatgtgtagtcatcttctggatctact |
270 |
Q |
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| T |
41104894 |
ttctcttatttgctcgctaccttatattacatgttaatcaaccttgatgaaattccaacatatagaatagaaccatgtgtag-catcatctggatctact |
41104796 |
T |
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| Q |
271 |
attgaagagttgtgttatttgaaagtgtaattgatctggatttagttgttatgcaaaatggaatctatgattagacatataatctattgtttggttgtag |
370 |
Q |
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| T |
41104795 |
attaaagagttgtg---tttgaaagtgcaattgatctggatttagttgtaatgc----------ttatgattagacatataatctattgtttagttgtag |
41104709 |
T |
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| Q |
371 |
catgttagctaaatacaaaaattg |
394 |
Q |
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| T |
41104708 |
catgttaactaaattcaaaaattg |
41104685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 39739082 - 39738981
Alignment:
| Q |
91 |
aagtgagcaagtgaatagatttatcaattaaatgagttgataccacaatatagctattggagtgaggatgaattaatatgttctcttatttgctcgctac |
190 |
Q |
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||||||| ||||||||| |||||||| |||| ||||||||||| |||| ||||||||||||||||||||| | | |||||||||||||||| ||||| |
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| T |
39739082 |
aagtgagtaagtgaatatatttatcatttaa-tgagttgatacaacaaaatagctattggagtgaggatg----actgtgttctcttatttgcttgctac |
39738988 |
T |
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| Q |
191 |
catatat |
197 |
Q |
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| ||||| |
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| T |
39738987 |
cttatat |
39738981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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