View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_14 (Length: 404)
Name: NF7802_low_14
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 27854772 - 27854557
Alignment:
| Q |
30 |
atcaatatatctttactaaataagttcaaaagtagttattatattacttctaagcctgtaattttattcataatattattacacttatgagtttttcaca |
129 |
Q |
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| T |
27854772 |
atcaaaatatctttactaaataagttcaaaagtagttattatattacttctaagcctgtaattttattcataatattattacactg-tgagtttttcaca |
27854674 |
T |
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| Q |
130 |
tatttcaatttataattctcttacacactttagttgttcaaattgacactataatatacgcaaaacgacactttaattgttcaatgtataaggtcattct |
229 |
Q |
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| T |
27854673 |
tacttcaatttataattctcttacacactttaattgtttaaattgacactataatatacgtaaagtgaaactttaattgttcaatatataagatcattcc |
27854574 |
T |
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| Q |
230 |
ctaaattggcaagcttg |
246 |
Q |
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| T |
27854573 |
ctaaatttgcaagcttg |
27854557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 27846722 - 27846571
Alignment:
| Q |
36 |
atatctttactaaataagttcaaaagtagttattatattacttctaagcctgtaattttat-------tcataatattattacacttatgagtttttcac |
128 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||| || |||||||| |||||||||||||||||| ||||||||||||| |
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| T |
27846722 |
atatctttactaaataagttcaaaaga------tatgttacttctaagcttgaaattttatacttatgtcataatattattacactcatgagtttttcac |
27846629 |
T |
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| Q |
129 |
atatttcaatttataattctcttacacactttagttgttcaaattgacactataatat |
186 |
Q |
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| T |
27846628 |
atacttcaatttataattctcttacacactttaatttttcaaattaaccctataatat |
27846571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 27835028 - 27834903
Alignment:
| Q |
36 |
atatctttactaaataagttcaaaagtagttattatattacttctaagcctgtaattttat-------tcataatattattacacttatgagtttttcac |
128 |
Q |
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|||||||||| |||||||||||||| |||||||||| |||||| |||||| |||||||||| | |||||||||| |||||||| |||||||| | |
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| T |
27835028 |
atatctttaccaaataagttcaaaattagttattatgttacttttaagccggtaattttatacttatgttataatattataacacttatcagtttttctc |
27834929 |
T |
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| Q |
129 |
atatttcaatttataattctcttaca |
154 |
Q |
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| T |
27834928 |
acacttcaaattataattctcctaca |
27834903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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