View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_16 (Length: 391)
Name: NF7802_low_16
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 18721079 - 18720833
Alignment:
| Q |
16 |
atattgttgttggtttggtttttgtgatgttatagtttgaagatgtgacaaagaacagaaactacagttactgtttttnnnnnnnnnnnnnnnnntatga |
115 |
Q |
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| T |
18721079 |
atattgttgttggtttggtttttgtgatgttatagtttgaagatgtgacaaagaacagaaactacagttactgtttttagagagagagagagag--atga |
18720982 |
T |
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| Q |
116 |
atatgaagaacaaaacaagagacagaaagggtggtgggaacagaaacagagaagaggtgtgacttgagagagagtaagatatattaaaggaactttgttt |
215 |
Q |
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| T |
18720981 |
atatgaagaacaaaacaagagacagaaagggtggtgggaacagaaacagagaagaggtgtgacttgag--agagtgagatatattaaaggaactttgttt |
18720884 |
T |
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| Q |
216 |
tgggcttttgttcctggcggnnnnnnngtgcactattctttgagataattg |
266 |
Q |
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| T |
18720883 |
tgggcttttgttcctggcggtttttttatgcactattctttgagataattg |
18720833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 18720778 - 18720712
Alignment:
| Q |
314 |
gttagatgattttaaaactacaatagttaaaattgaaactaaacatagttccacgtagttaattctt |
380 |
Q |
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| T |
18720778 |
gttatatgattttaaaactacaatagttaaaattgaaactcaacatagttccacgtagttaattctt |
18720712 |
T |
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