View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_17 (Length: 390)
Name: NF7802_low_17
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 27 - 369
Target Start/End: Original strand, 28585645 - 28585987
Alignment:
| Q |
27 |
ggatcgattaccttagaaagagtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatct |
126 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585645 |
ggattgattaccttagaaagagtatgtgctgataagggagaaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatct |
28585744 |
T |
|
| Q |
127 |
ttttccaatttttccactcagaatcgtctttatatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttc |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585745 |
ttttccaatttttccactcagaatcgtctttatatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttc |
28585844 |
T |
|
| Q |
227 |
tgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcga |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585845 |
tgtaacaactgctcttacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcga |
28585944 |
T |
|
| Q |
327 |
ggcttcctcggagcattaacatgtccaatttcactttttgagt |
369 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28585945 |
ggcttcctcggagcattaacatgtccaattgcactttttgagt |
28585987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 47 - 369
Target Start/End: Complemental strand, 28404131 - 28403809
Alignment:
| Q |
47 |
agtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttttccaatttttccactca |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28404131 |
agtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttttccaatttttccactca |
28404032 |
T |
|
| Q |
147 |
gaatcgtctttatatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttactt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28404031 |
gaatcgtctttatatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttactt |
28403932 |
T |
|
| Q |
247 |
ctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctcggagcattaac |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28403931 |
ctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctcggagcattaac |
28403832 |
T |
|
| Q |
347 |
atgtccaatttcactttttgagt |
369 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
28403831 |
atgtccaattgcactttttgagt |
28403809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 47 - 335
Target Start/End: Complemental strand, 28417679 - 28417400
Alignment:
| Q |
47 |
agtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttttccaatttttccactca |
146 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
28417679 |
agtatgtgctgataagggagcaatgacgatgatatcagcccacttagcaagctcaatgtgaagcacagaatcacctatctttttcctatttttccagtca |
28417580 |
T |
|
| Q |
147 |
gaatcgtctttatatatgtcatgcctgtgtgtgaacaatgattctgctttctcatgaacaagaaattgcaaagatgtttctgtaacaactgctcttactt |
246 |
Q |
| |
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|||||| |||| | | ||||| ||||||||||||||||| | |||||||||| |||| ||||| ||| ||||| ||| |||||| |
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| T |
28417579 |
tgatcgtcgcagaatattacttc---------gaacattgattctgctttctcattagcaagaaattgtaaagctgtttttgtgacaacagcttttactt |
28417489 |
T |
|
| Q |
247 |
ctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
335 |
Q |
| |
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||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |
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| T |
28417488 |
ctgcccattctgataaagcacgaagaacaagtccaaatttcatggcagctacacttccacaagcaccaagtacaatccgaggcttcctc |
28417400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 28580575 - 28580672
Alignment:
| Q |
32 |
gattaccttagaaagagtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcacagaatcacctatctttt |
129 |
Q |
| |
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||||||||| | || | ||| ||||||||||||||||||| ||||||||||||||||| | ||||| |||||| |||||||||||||||||||||||| |
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| T |
28580575 |
gattaccttggcaacaatatctgctgataagggagcaatgtccatgatgtcagcccaacttgcaagctcaatgggaagcacagaatcacctatctttt |
28580672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 335
Target Start/End: Complemental strand, 28419944 - 28419851
Alignment:
| Q |
242 |
tacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
335 |
Q |
| |
|
||||||||||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
28419944 |
tacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatccgaggcttcctc |
28419851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 335
Target Start/End: Original strand, 28582246 - 28582339
Alignment:
| Q |
242 |
tacttctgcccattctgaaaaagcattaaaaacaagtccaaatttcatagcagctacacttccacaacaaccaagtagaattcgaggcttcctc |
335 |
Q |
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||||||||||||||| ||||||| || ||| ||||| ||||||||||||||||||||||||||| ||||| | ||| |||||||||||| |
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| T |
28582246 |
tacttctgcccattccataaaagcacgaagaacgagtccgaatttcatagcagctacacttccacaagcaccaatcacaatccgaggcttcctc |
28582339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 28420142 - 28420067
Alignment:
| Q |
32 |
gattaccttagaaagagtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtga |
107 |
Q |
| |
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||||||||| | ||||||||| || |||||||||||||||| || ||| ||||||||||| ||||| | ||||||| |
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| T |
28420142 |
gattaccttggcaagagtatgagcagataagggagcaatgagcaagatatcagcccaattcgcaagcttaatgtga |
28420067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 28582048 - 28582123
Alignment:
| Q |
32 |
gattaccttagaaagagtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtga |
107 |
Q |
| |
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||||||||| | ||||||||| || |||||||||||||||| || ||| ||||||||||| ||||| | ||||||| |
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| T |
28582048 |
gattaccttggcaagagtatgagcagataagggagcaatgagcaagatatcagcccaattcgcaagcttaatgtga |
28582123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 12984760 - 12984829
Alignment:
| Q |
44 |
aagagtatgtgctgataagggagcaatgaccatgatgtcagcccaattagcaagttcaatgtgaagcaca |
113 |
Q |
| |
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|||||| | |||||| || ||||||||||||||||| |||||||| || ||| ||||||||||||||| |
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| T |
12984760 |
aagagtgtttgctgacaatggagcaatgaccatgatatcagcccatttgcgaagctcaatgtgaagcaca |
12984829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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