View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_18 (Length: 387)

Name: NF7802_low_18
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_18
NF7802_low_18
[»] chr1 (26 HSPs)
chr1 (18-212)||(12181331-12181525)
chr1 (64-205)||(11670905-11671046)
chr1 (62-206)||(3448914-3449058)
chr1 (64-205)||(11672513-11672654)
chr1 (78-204)||(36814105-36814231)
chr1 (65-205)||(12181056-12181191)
chr1 (68-199)||(21087712-21087843)
chr1 (296-386)||(12181159-12181248)
chr1 (306-384)||(3449025-3449102)
chr1 (304-369)||(12180893-12180958)
chr1 (297-369)||(3447283-3447355)
chr1 (61-204)||(12180769-12180913)
chr1 (68-199)||(20771116-20771246)
chr1 (78-204)||(36817250-36817376)
chr1 (99-193)||(4033061-4033155)
chr1 (66-205)||(10162848-10162986)
chr1 (311-386)||(11671013-11671087)
chr1 (79-206)||(13993626-13993753)
chr1 (66-190)||(29292645-29292769)
chr1 (62-128)||(3447236-3447302)
chr1 (77-175)||(35238889-35238987)
chr1 (306-368)||(46135754-46135816)
chr1 (308-370)||(4033160-4033222)
chr1 (66-124)||(29263495-29263553)
chr1 (156-205)||(10833545-10833594)
chr1 (66-123)||(46135711-46135768)
[»] chr4 (10 HSPs)
chr4 (64-205)||(42430833-42430974)
chr4 (65-205)||(3071578-3071718)
chr4 (66-206)||(36761834-36761974)
chr4 (62-205)||(4897530-4897673)
chr4 (83-199)||(22497822-22497938)
chr4 (62-148)||(38705651-38705737)
chr4 (62-186)||(49058294-49058418)
chr4 (314-371)||(49408729-49408786)
chr4 (306-358)||(22497951-22498003)
chr4 (297-386)||(49058245-49058329)
[»] chr3 (8 HSPs)
chr3 (62-194)||(49089583-49089715)
chr3 (297-371)||(34618926-34619000)
chr3 (79-206)||(3964734-3964861)
chr3 (108-205)||(34618810-34618909)
chr3 (297-370)||(52655497-52655570)
chr3 (104-175)||(3956790-3956861)
chr3 (297-371)||(49089530-49089604)
chr3 (21-61)||(34618966-34619006)
[»] chr8 (9 HSPs)
chr8 (62-205)||(13014675-13014818)
chr8 (86-205)||(39544792-39544911)
chr8 (68-205)||(38064309-38064446)
chr8 (80-205)||(26228581-26228706)
chr8 (66-175)||(7305479-7305588)
chr8 (67-180)||(13013440-13013553)
chr8 (66-204)||(7302917-7303055)
chr8 (317-371)||(7305571-7305625)
chr8 (297-371)||(13014797-13014871)
[»] chr7 (11 HSPs)
chr7 (62-204)||(48572641-48572783)
chr7 (62-205)||(30879390-30879532)
chr7 (66-205)||(41397630-41397773)
chr7 (306-386)||(48572748-48572827)
chr7 (61-205)||(22112165-22112309)
chr7 (61-205)||(40494142-40494286)
chr7 (62-205)||(22130436-22130582)
chr7 (62-205)||(40500524-40500670)
chr7 (315-385)||(22130548-22130617)
chr7 (315-385)||(40500489-40500558)
chr7 (297-371)||(41397756-41397830)
[»] chr5 (12 HSPs)
chr5 (66-205)||(6454316-6454455)
chr5 (65-205)||(13860113-13860257)
chr5 (62-205)||(13858148-13858295)
chr5 (77-199)||(11664624-11664746)
chr5 (297-371)||(13858274-13858348)
chr5 (297-371)||(6454438-6454512)
chr5 (297-358)||(11664759-11664820)
chr5 (141-205)||(90749-90813)
chr5 (311-366)||(13860071-13860126)
chr5 (21-61)||(6454478-6454518)
chr5 (21-61)||(13858314-13858354)
chr5 (21-61)||(13860051-13860091)
[»] chr2 (7 HSPs)
chr2 (66-133)||(35549724-35549791)
chr2 (77-205)||(14389770-14389898)
chr2 (140-205)||(29171422-29171487)
chr2 (62-205)||(5813365-5813508)
chr2 (157-205)||(14391636-14391684)
chr2 (306-345)||(35549797-35549836)
chr2 (311-355)||(37672646-37672689)
[»] chr6 (2 HSPs)
chr6 (70-205)||(35026096-35026232)
chr6 (140-205)||(7300648-7300713)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 12181525 - 12181331
Alignment:
Q  18 caatttgtaaacatattcacttgaagctcaagtggtatgcaaatttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattct 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12181525 caatttgtaaacatattcacttggagctcaagtggtatgcaaatttgcaagttcgattacagtgctaactattttattgattatttgaaccttaaattct 12181426  T
Q  118 tgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaaagtaaaa 212  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12181425 tgttgccttcagattcgtatcgatctaattcaattttggttgttctaaatatattaagacaagtggtgtgtaatcaaagtttctaaaaagtaaaa 12181331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 11671046 - 11670905
Alignment:
Q  64 gcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttct 163  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||   ||| || ||||||  | | |||||||||    
T  11671046 gcaagttcgatttcaatgctaactattttattggttatttgaaccttgaattctttttgccttcagatttttatcaatgtaatttgttgtcggttgttct 11670947  T
Q  164 aaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||| | ||||| ||||||||||||||||| |||||    
T  11670946 aaatatattaggacaagtagtgtgtaatcaaagtttgtaaaa 11670905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 3449058 - 3448914
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    |||||||||||||  |||||||||||||||||||  |||||||||||||||||| || ||||||||||||||  ||| || ||||| ||| | |||||||    
T  3449058 ttgcaagttcgatctcaatgctaactattttattagttatttgaaccttaaattatttttgccttcagattcctatcaatgtaattcaatatcggttgtt 3448959  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaaa 206  Q
    |||||||||||||| |||||  |||||||||| ||||| ||||||    
T  3448958 ctaaatatattaagacaagtaatgtgtaatcagagtttgtaaaaa 3448914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 11672654 - 11672513
Alignment:
Q  64 gcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttct 163  Q
    |||||||  ||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||  |||| ||||||||  || | |||||||||    
T  11672654 gcaagtttcatttcaatgctaactattttattggttatttgaaccttgaattctttttgccttcagatttcgatcaatctaattcgatgtcggttgttct 11672555  T
Q  164 aaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
     ||||||||| | ||| | ||||||||||||||||| |||||    
T  11672554 gaatatattaggacaaatagtgtgtaatcaaagtttgtaaaa 11672513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 36814105 - 36814231
Alignment:
Q  78 aatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggc 177  Q
    ||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||  ||  |||||||| ||| | |||||||||||||||||| || |    
T  36814105 aatgctagctattttattggttatttgaactttaaattctttttgccttcagattcctattaatctaattcaatgtcggttgttctaaatatattcagac 36814204  T
Q  178 aagtggtgtgtaatcaaagtttctaaa 204  Q
     ||| ||||||||||||||||| ||||    
T  36814205 gagtagtgtgtaatcaaagtttgtaaa 36814231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 12181191 - 12181056
Alignment:
Q  65 caagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttcta 164  Q
    ||||||| ||| |||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||   || ||||||||| |||| | ||||||||    
T  12181191 caagttcaatttcaatgctaactattttattggtgatttgaacattaaattcatgttgccttcagattcctgtcaatctaatttgatttcgattgttcta 12181092  T
Q  165 aatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||     || ||||||||||||||||||||||| |||||    
T  12181091 aata-----agacaagtggtgtgtaatcaaagtttgtaaaa 12181056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 21087712 - 21087843
Alignment:
Q  68 gttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaat 167  Q
    |||||||| |||||||| ||||||||||| |||||| |  ||||||||||| ||||||| ||||||  ||| ||||||||  |||| |||||||||||||    
T  21087712 gttcgatttcaatgctagctattttattggttatttaatacttaaattctttttgcctttagattcctatcaatctaattcgatttcggttgttctaaat 21087811  T
Q  168 atattaaggcaagtggtgtgtaatcaaagttt 199  Q
    |||||||| ||  | |||||||||||||||||    
T  21087812 atattaagacatctagtgtgtaatcaaagttt 21087843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 12181248 - 12181159
Alignment:
Q  296 caacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgcttaactatattattgg 386  Q
    ||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||||||| ||||||| |||||||    
T  12181248 caacatgcttacttaaagctcaagtggtatgcaaatgaggagtcatagtttattttacaagttcaatttcaatgc-taactattttattgg 12181159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 384
Target Start/End: Complemental strand, 3449102 - 3449025
Alignment:
Q  306 actcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgcttaactatattatt 384  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| ||||||| |||||    
T  3449102 actcaaagctcaagtggtatgtaaatgaagagtcatagttcatgttgcaagttcgatctcaatgc-taactattttatt 3449025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 12180958 - 12180893
Alignment:
Q  304 ttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatg 369  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  12180958 ttactcgaagctcaagtggtatgcaaatgaggagtcatagttcattttgcaagttcaatttcaatg 12180893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 3447355 - 3447283
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatg 369  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||    
T  3447355 aacatgttcactcaaagctcaagtggtatgtaaatgaagagtcttagttcatgttgcaagttcgatttcaatg 3447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 12180913 - 12180769
Alignment:
Q  61 tttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattc-ttgttgccttcagattcggatcgatctaatttaattttggttg 159  Q
    ||||||||||| ||| ||||| || | ||||||||| ||||||||||||||||||| || |||||||  |||||  ||| ||||||||  || | |||||    
T  12180913 tttgcaagttcaatttcaatgttagccattttattgtttatttgaaccttaaattcttttttgcctttggattcctatcaatctaattcgatgtcggttg 12180814  T
Q  160 ttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaa 204  Q
    |||||||||||||||| ||||| || | |||||||||||| ||||    
T  12180813 ttctaaatatattaagacaagtagtatataatcaaagtttgtaaa 12180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 20771116 - 20771246
Alignment:
Q  68 gttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaat 167  Q
    |||||||| |||||||| |||| |||||| |||||| |  ||||||||||| ||||||| ||||||  ||| ||||||||  |||| ||||||||| |||    
T  20771116 gttcgatttcaatgctagctatcttattggttatttaatacttaaattctttttgcctttagattcctatcaatctaattcgatttcggttgttct-aat 20771214  T
Q  168 atattaaggcaagtggtgtgtaatcaaagttt 199  Q
    |||||||| || || |||||||||||||||||    
T  20771215 atattaagacatgtagtgtgtaatcaaagttt 20771246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 204
Target Start/End: Original strand, 36817250 - 36817376
Alignment:
Q  78 aatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggc 177  Q
    ||||||| ||||||||||| |||||||||| |||| ||||| |||| |||| ||||  ||  |||||||| ||| | ||||||||||||||||||||| |    
T  36817250 aatgctagctattttattggttatttgaacattaatttctttttgcattcaaattcctattaatctaattcaatgtcggttgttctaaatatattaagac 36817349  T
Q  178 aagtggtgtgtaatcaaagtttctaaa 204  Q
      || ||||||||||||||||| ||||    
T  36817350 gggtagtgtgtaatcaaagtttgtaaa 36817376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 4033155 - 4033061
Alignment:
Q  99 tatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggcaagtggtgtgtaatca 193  Q
    |||||||||||||||||||| ||||||||||||||  ||| || |||||  || | |||| |||||||||||||||| ||||| |||||||||||    
T  4033155 tatttgaaccttaaattctttttgccttcagattcatatcaatttaattcgatgtcggttattctaaatatattaagacaagtagtgtgtaatca 4033061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 10162848 - 10162986
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaa 165  Q
    |||||| ||| |||||||| |||||| |||| |||||| | |||||| ||||| || |||||| |||   ||| ||||||||| || ||||||||| |||    
T  10162848 aagttctatttcaatgctagctattt-attggttatttcatccttaacttctttttaccttcatatttctatcaatctaatttgatgttggttgttttaa 10162946  T
Q  166 atatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||||  |||| |||| |||||||||||| |||||    
T  10162947 atatattaagagaagtagtgtctaatcaaagtttgtaaaa 10162986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 11671087 - 11671013
Alignment:
Q  311 aagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgcttaactatattattgg 386  Q
    ||||||||||||||||||||||| ||||||| |||||| | |||||||| |||||||||| ||||||| |||||||    
T  11671087 aagctcaagtggtatgtaaatgaggagtcatggttcatgtagcaagttcgatttcaatgc-taactattttattgg 11671013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 13993753 - 13993626
Alignment:
Q  79 atgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggca 178  Q
    |||||| | ||||||||| ||||||| | ||||||||||| ||||||||| |||   ||  ||||||||| || | |||||||  |||||||||||| ||    
T  13993753 atgctagccattttattggttatttggatcttaaattctttttgccttcaaatttctataaatctaatttgatgtcggttgttagaaatatattaagaca 13993654  T
Q  179 agtggtgtgtaatcaaagtttctaaaaa 206  Q
    | | ||||||||||||||||| ||||||    
T  13993653 aatagtgtgtaatcaaagtttgtaaaaa 13993626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 29292645 - 29292769
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaa 165  Q
    |||||||||| ||||| ||  |||||||||| ||||||||||||||||||||| || ||||| ||||   ||| ||| ||||  |  | |||||||||||    
T  29292645 aagttcgatttcaatgttaggtattttattggttatttgaaccttaaattctttttaccttctgatttctatcaatcgaattagacgtcggttgttctaa 29292744  T
Q  166 atatattaaggcaagtggtgtgtaa 190  Q
    |||||||||| || || ||||||||    
T  29292745 atatattaagacaggtagtgtgtaa 29292769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 3447302 - 3447236
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttca 128  Q
    |||||||||||||| ||||| || ||||||||||| ||||||| |||||||||| || |||||||||    
T  3447302 ttgcaagttcgatttcaatgatagctattttattggttatttgtaccttaaattatttttgccttca 3447236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 35238987 - 35238889
Alignment:
Q  77 caatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaag 175  Q
    ||||||||  ||||||||| ||||||||||||||||||| || ||| |||| |||||  ||| ||| ||||| |  | |||||||||||||||||||||    
T  35238987 caatgctaggtattttattaattatttgaaccttaaattttttttgtcttctgattcctatcaatcgaatttgacgtcggttgttctaaatatattaag 35238889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 46135816 - 46135754
Alignment:
Q  306 actcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaat 368  Q
    |||| ||| |||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||    
T  46135816 actcgaagttcaagtggtatgcaaatgaagagtcatagttcatgttgtaagttcgatttcaat 46135754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 4033222 - 4033160
Alignment:
Q  308 tcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgc 370  Q
    |||||||| |||||||||||||| || ||||| ||| |||| |||||||||| ||||||||||    
T  4033222 tcaaagcttaagtggtatgtaaacgaggagtcgtaggtcatgttgcaagttctatttcaatgc 4033160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 29263495 - 29263553
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgcc 124  Q
    |||||||||| ||||| ||  |||||||||| ||||||||||||||||||||| |||||    
T  29263495 aagttcgatttcaatgttaggtattttattggttatttgaaccttaaattctttttgcc 29263553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 10833545 - 10833594
Alignment:
Q  156 gttgttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||| |||||    
T  10833545 gttgttttaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaa 10833594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 46135768 - 46135711
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgc 123  Q
    |||||||||| |||| |||  |||||||||| ||||||||||||||||||||| ||||    
T  46135768 aagttcgatttcaatactaggtattttattggttatttgaaccttaaattctttttgc 46135711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 42430833 - 42430974
Alignment:
Q  64 gcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttct 163  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||  ||||||||||||   ||| ||||||||  |||| |||||||||    
T  42430833 gcaaattcgatttcaatgctaattattttattgattatttgaaccttgaattctttgtgccttcagatttctatcaatctaattcgatttcggttgttct 42430932  T
Q  164 aaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||| | ||||| ||||||||||||||||| |||||    
T  42430933 aaatatattaggacaagtagtgtgtaatcaaagtttgtaaaa 42430974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 3071718 - 3071578
Alignment:
Q  65 caagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttcta 164  Q
    ||||||| ||| |||||||| ||||||||||| |||||||||| || ||||||| ||||||| ||||||  ||| ||||||||| || | | ||| ||||    
T  3071718 caagttcaatttcaatgctagctattttattggttatttgaacttttaattctttttgcctttagattcctatcaatctaatttgatgtcgattgctcta 3071619  T
Q  165 aatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||||| |||||  ||||||||| |||||| |||||    
T  3071618 aatatattaagacaagtaatgtgtaatccaagtttgtaaaa 3071578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 36761834 - 36761974
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaa 165  Q
    ||||| |||| |||||||| ||||||||||| |||||||||  |||||||||| |||| |||||||||  ||| ||| ||||  || | |||||||||||    
T  36761834 aagtttgatttcaatgctagctattttattggttatttgaaatttaaattctttttgcgttcagattcctatcaatcgaattcgatatcggttgttctaa 36761933  T
Q  166 atatattaaggcaagtggtgtgtaatcaaagtttctaaaaa 206  Q
     |||||||||  |||| ||||||||||||| ||| ||||||    
T  36761934 ttatattaagataagtagtgtgtaatcaaaatttgtaaaaa 36761974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 4897530 - 4897673
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    ||||||||||||||  | ||| | ||||||||| | ||||||||| |||||||| |  ||||||||| ||||  ||| ||||||||  || | |||| ||    
T  4897530 ttgcaagttcgattttagtgcgagctattttataggttatttgaatcttaaattttgtttgccttcaaattcatatcaatctaattcgatgtcggttatt 4897629  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||    
T  4897630 ctaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaa 4897673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 22497938 - 22497822
Alignment:
Q  83 taactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggcaagtg 182  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||| |||   ||| ||||| ||  || |  |||||||||||||||||||| |||||     
T  22497938 taactattttattggttatttgaaccttgaattctttttgccttcaaatttctatcaatctagttcgatgtcagttgttctaaatatattaagacaagta 22497839  T
Q  183 gtgtgtaatcaaagttt 199  Q
    || ||||||||||||||    
T  22497838 gtctgtaatcaaagttt 22497822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 38705651 - 38705737
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaattt 148  Q
    |||||| ||| ||| |||||||||||||||||||| ||||||||| ||||||||||| | | ||||||||||  ||| |||||||||    
T  38705651 ttgcaaattcaatttcaatgctaactattttattggttatttgaatcttaaattcttttagtcttcagattcatatcaatctaattt 38705737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 49058294 - 49058418
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    ||||||||||||||  |||| || ||||||||||| |||||| ||| |||||||||| ||||||||||||     || ||||||||  || |  ||||||    
T  49058294 ttgcaagttcgattttaatgttagctattttattggttattttaacattaaattctttttgccttcagatatttgtcaatctaattcgatgtcagttgtt 49058393  T
Q  162 ctaaatatattaaggcaagtggtgt 186  Q
    |||||||||||||| ||||| ||||    
T  49058394 ctaaatatattaagacaagtagtgt 49058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 49408729 - 49408786
Alignment:
Q  314 ctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||||||||||||||||| |||||||| || || ||| |||||| |||||||||||    
T  49408729 ctcaagtggtatgtaaatgaggagtcataatttatattgtaagttcgatttcaatgct 49408786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 22498003 - 22497951
Alignment:
Q  306 actcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagtt 358  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| | |||||||    
T  22498003 actcgaagcttaagtggtatgtaaatgaggagtcatagttcatgtagcaagtt 22497951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 386
Target Start/End: Original strand, 49058245 - 49058329
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgcttaactatattattgg 386  Q
    |||||| | ||||||||||||||||||||||||| ||| |||    |||||| |||||||||| |||| |||| ||| |||| |||||||    
T  49058245 aacatgttcactcaaagctcaagtggtatgtaaacgaaaagt----gttcatgttgcaagttcgattttaatg-ttagctattttattgg 49058329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 49089583 - 49089715
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    ||||||||| |||| |||||||| ||||||||||| ||||||||  ||||||||||| ||||||| ||||||  ||| |||||||| ||| | |||||||    
T  49089583 ttgcaagtttgatttcaatgctagctattttattggttatttgactcttaaattctttttgccttaagattcctatcaatctaattcaatgtcggttgtt 49089682  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaa 194  Q
    |||||||||||||| ||||||||||||||||||    
T  49089683 ctaaatatattaagacaagtggtgtgtaatcaa 49089715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 34619000 - 34618926
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||| | |||| ||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||    
T  34619000 aacatgttcactcgaagctcaagtggtatgtaaatgaggagtcataattcatgttgcaagttcgatttcaatgct 34618926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 3964734 - 3964861
Alignment:
Q  79 atgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggca 178  Q
    |||||| | ||||||||| ||||||| | ||||||||||| ||||||||| |||   ||  |||||| || || | |||||||  |||||||||||| ||    
T  3964734 atgctagccattttattggttatttggatcttaaattctttttgccttcaaatttctattaatctaacttgatgtcggttgttggaaatatattaagaca 3964833  T
Q  179 agtggtgtgtaatcaaagtttctaaaaa 206  Q
    ||| ||||||||||||||||| ||||||    
T  3964834 agtagtgtgtaatcaaagtttgtaaaaa 3964861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 34618909 - 34618810
Alignment:
Q  108 cttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaat--atattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||||| ||||||||| ||||  ||| ||||||||| || | |||||||||||||  ||||||||  |||| ||||||||||||||||| |||||    
T  34618909 cttaaattctttttgccttcaaattcctatcaatctaatttgatgtcggttgttctaaatatatattaagaaaagtagtgtgtaatcaaagtttgtaaaa 34618810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 52655497 - 52655570
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgc 370  Q
    |||||| | ||||||||||||||| |||| |||||| |||| |||| || || |||||||||| ||||||||||    
T  52655497 aacatgttcactcaaagctcaagttgtatttaaatggagagccataatttatgttgcaagttcgatttcaatgc 52655570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 3956861 - 3956790
Alignment:
Q  104 gaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaag 175  Q
    ||||||||| || || || |||||||||||  ||| ||||||||| |||| |||||||| ||||||||||||    
T  3956861 gaaccttaatttttttttaccttcagattcctatcaatctaatttgatttcggttgttccaaatatattaag 3956790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 49089530 - 49089604
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||| | |||| ||||||||||| ||||||||||| ||||  ||||| || |||||||||  |||||||||||    
T  49089530 aacatgttcactcgaagctcaagtgatatgtaaatgaggagttgtagtttatgttgcaagtttgatttcaatgct 49089604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 34619006 - 34618966
Alignment:
Q  21 tttgtaaacatattcacttgaagctcaagtggtatgcaaat 61  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  34619006 tttgtaaacatgttcactcgaagctcaagtggtatgtaaat 34618966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 13014818 - 13014675
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    ||||||||| |||| |||||||| |||||||| |||||||||||||||| ||||||| |||| |||||||||  | | ||||||||  ||||||||||||    
T  13014818 ttgcaagtttgatttcaatgctagctattttaatgattatttgaaccttgaattctttttgctttcagattcttaacaatctaattcgattttggttgtt 13014719  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||||||||  || | ||||||||| ||||||| |||||    
T  13014718 ctaaatatattaagataaatagtgtgtaattaaagtttgtaaaa 13014675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 39544792 - 39544911
Alignment:
Q  86 ctattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggcaagtggtg 185  Q
    ||||||||||| ||||||||||||||||||||| || |||||||||||  ||| ||||||||| || | ||||||||||||||||||||  |||||||||    
T  39544792 ctattttattggttatttgaaccttaaattctttttaccttcagattcttatcaatctaatttgatgtcggttgttctaaatatattaaaacaagtggtg 39544891  T
Q  186 tgtaatcaaagtttctaaaa 205  Q
    | |||||||||||| |||||    
T  39544892 tataatcaaagtttgtaaaa 39544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 38064446 - 38064309
Alignment:
Q  68 gttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaat 167  Q
    |||||||| |||||||||| ||||||||| |||||| |||||||| ||||| |||| |||| ||||  ||  ||||||||  || | ||||||| |||||    
T  38064446 gttcgatttcaatgctaacaattttattggttattttaaccttaacttctttttgctttcatattcctattaatctaattcgatgtcggttgttttaaat 38064347  T
Q  168 atattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||| ||||| ||||||||||||||||| |||||    
T  38064346 atattaagacaagtagtgtgtaatcaaagtttgtaaaa 38064309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 26228581 - 26228706
Alignment:
Q  80 tgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaaggcaa 179  Q
    ||||| ||||| ||||  ||||||| || |||||||| | ||||||||| ||||  ||| ||||||||  || ||||||||||||||||| ||||| ||     
T  26228581 tgctagctattctatttgttatttggacattaaattcgttttgccttcaaattcttatcaatctaattcgatgttggttgttctaaatatgttaagacag 26228680  T
Q  180 gtggtgtgtaatcaaagtttctaaaa 205  Q
    || ||||||||||||||||| |||||    
T  26228681 gtagtgtgtaatcaaagtttgtaaaa 26228706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 7305588 - 7305479
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaa 165  Q
    ||||| |||| ||||||||  |||||||||| ||||||||||||||||||| | ||| ||||||||||  ||| ||| ||||  || | ||||||| |||    
T  7305588 aagtttgatttcaatgctagatattttattggttatttgaaccttaaattccttttgtcttcagattcctatcaatcgaattcgatatcggttgttataa 7305489  T
Q  166 atatattaag 175  Q
    ||||||||||    
T  7305488 atatattaag 7305479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 13013553 - 13013440
Alignment:
Q  67 agttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaa 166  Q
    |||| |||| ||||||||   ||||||||  ||||||||||||||||||||| ||  ||||||||||  ||| || |||||| || | ||||||||||||    
T  13013553 agtttgatttcaatgctagtaattttattcgttatttgaaccttaaattctttttatcttcagattcctatcaatttaatttgatgtcggttgttctaaa 13013454  T
Q  167 tatattaaggcaag 180  Q
    ||||||||| ||||    
T  13013453 tatattaagacaag 13013440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 7303055 - 7302917
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaa 165  Q
    ||||| |||| ||||| | | ||||||||||||||||| ||| |||||||||| ||  ||||||||||  ||| ||| ||||  || | | |||||||||    
T  7303055 aagtttgatttcaatgttgagtattttattgattatttaaactttaaattctttttatcttcagattcctatcaatcgaattcgatgtcgattgttctaa 7302956  T
Q  166 atatattaaggcaagtggtgtgtaatcaaagtttctaaa 204  Q
    |||||||||| ||| | ||||||||| ||| ||| ||||    
T  7302955 atatattaagacaattagtgtgtaattaaaatttgtaaa 7302917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 7305625 - 7305571
Alignment:
Q  317 aagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||||||  ||||||||||||||||||||| ||| |||||  |||||||||||    
T  7305625 aagtggtatacaaatgaagagtcatagttcatgttgtaagtttgatttcaatgct 7305571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 13014871 - 13014797
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||| | |||| ||||||||||| ||||||||| | || |||| |||||| |||||||||  |||||||||||    
T  13014871 aacatgttcactcgaagctcaagtgatatgtaaattaggaatcatcgttcatgttgcaagtttgatttcaatgct 13014797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 48572783 - 48572641
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    |||||||||| |||  ||||||||||||||||||| |||||||||||||||||| || ||| |||| |||||  ||| ||||||||| ||   |||||||    
T  48572783 ttgcaagttcaattttaatgctaactattttattggttatttgaaccttaaattttttttgtcttctgattcctatcaatctaatttgatgccggttgtt 48572684  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaa 204  Q
    |||||||||||||| ||| | ||||||||||||||||| ||||    
T  48572683 ctaaatatattaagacaattagtgtgtaatcaaagtttgtaaa 48572641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 30879532 - 30879390
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    |||||||||||||| |||||||| |||||| |||| |||||| |||||||||||||| ||||||||| |||   ||| |||||||||||  | |||||||    
T  30879532 ttgcaagttcgatttcaatgctagctattt-attggttatttaaaccttaaattctttttgccttcaaattgttatcaatctaatttaaagtcggttgtt 30879434  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||||||| |||||  |||||||| ||| ||| |||||    
T  30879433 ctaaatatattaagacaagtaatgtgtaataaaaatttgtaaaa 30879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 41397773 - 41397630
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaacc----ttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    |||||||||| |||||||| ||||||||||| |||  ||||||    |||||||||| ||||||||||||||  ||| ||||||||  || | |||||||    
T  41397773 aagttcgatttcaatgctagctattttattggttacatgaaccatacttaaattctttttgccttcagattcctatcaatctaattcgatgtcggttgtt 41397674  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||||||| ||||| |||||||| |||| ||| |||||    
T  41397673 ctaaatatattaagacaagtagtgtgtaaccaaattttgtaaaa 41397630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 386
Target Start/End: Complemental strand, 48572827 - 48572748
Alignment:
Q  306 actcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgcttaactatattattgg 386  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||| ||||||| |||||||    
T  48572827 actcgaagctcaagtggtatgtaaatgaggagtcgtagttcatgttgcaagttcaattttaatgc-taactattttattgg 48572748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 22112309 - 22112165
Alignment:
Q  61 tttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgt 160  Q
    |||||||||||||||  |||  ||| ||| |||||  ||||||||||||||||||||| || |||| ||||||  ||  ||||||||  || | ||||||    
T  22112309 tttgcaagttcgattttaattttaattatattatttgttatttgaaccttaaattctttttacctttagattcatattaatctaattcgatgtcggttgt 22112210  T
Q  161 tctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||||||||  || | ||||||||| ||||||| |||||    
T  22112209 tctaaatatattaagataaatagtgtgtaattaaagtttgtaaaa 22112165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 205
Target Start/End: Original strand, 40494142 - 40494286
Alignment:
Q  61 tttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgt 160  Q
    |||||||||||||||  |||  ||| ||| |||||  ||||||||||||||||||||| || |||| ||||||  ||  ||||||||  || | ||||||    
T  40494142 tttgcaagttcgattttaattttaattatattatttgttatttgaaccttaaattctttttacctttagattcatattaatctaattcgatgtcggttgt 40494241  T
Q  161 tctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||||||||  || | ||||||||| ||||||| |||||    
T  40494242 tctaaatatattaagataaatagtgtgtaattaaagtttgtaaaa 40494286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 22130582 - 22130436
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattct---tgttgccttcagattcggatcgatctaatttaattttggtt 158  Q
    |||||||||||||| |||| ||| |||| |||||||||||||||||||| |||| |   | |||| |||||||||  ||| ||||||||  || | ||||    
T  22130582 ttgcaagttcgatttcaattctagctatattattgattatttgaacctttaattttttgttttgcattcagattcctatcaatctaattcgatgtcggtt 22130483  T
Q  159 gttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||  |||||||||||| |||||    |||||||||||||| |||||    
T  22130482 gtttgaaatatattaagacaagtaacatgtaatcaaagtttgtaaaa 22130436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 40500524 - 40500670
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattct---tgttgccttcagattcggatcgatctaatttaattttggtt 158  Q
    |||||||||||||| |||| ||| |||| |||||||||||||||||||| |||| |   | |||| |||||||||  ||| ||||||||  || | ||||    
T  40500524 ttgcaagttcgatttcaattctagctatattattgattatttgaacctttaattttttgttttgcattcagattcctatcaatctaattcgatgtcggtt 40500623  T
Q  159 gttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||  |||||||||||| |||||    |||||||||||||| |||||    
T  40500624 gtttgaaatatattaagacaagtaacatgtaatcaaagtttgtaaaa 40500670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 22130617 - 22130548
Alignment:
Q  315 tcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgcttaactatattattg 385  Q
    |||||||||||||||| || |||||||| ||||| |||||||||| |||||||| | || |||||||||||    
T  22130617 tcaagtggtatgtaaacgaggagtcatacttcatgttgcaagttcgatttcaattc-tagctatattattg 22130548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 40500489 - 40500558
Alignment:
Q  315 tcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgcttaactatattattg 385  Q
    |||||||||||||||| || |||||||| ||||| |||||||||| |||||||| | || |||||||||||    
T  40500489 tcaagtggtatgtaaacgaggagtcatacttcatgttgcaagttcgatttcaattc-tagctatattattg 40500558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 41397830 - 41397756
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||| | |||| |||||||||| |||||||||  | |||||||| ||||| ||| |||||| |||||||||||    
T  41397830 aacatgttcactcgaagctcaagtcgtatgtaaagaaggagtcataattcatgttgaaagttcgatttcaatgct 41397756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 66 - 205
Target Start/End: Complemental strand, 6454455 - 6454316
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaa 165  Q
    |||||||||| ||||||||   ||||||||| ||||||||||||||||||||| ||||||||||||||  ||| ||| ||||  |  | |||||||||||    
T  6454455 aagttcgatttcaatgctaggaattttattggttatttgaaccttaaattctttttgccttcagattcctatcaatcgaattcgaggtcggttgttctaa 6454356  T
Q  166 atatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||| ||||| ||||||||| ||| ||| |||||    
T  6454355 atatattaagacaagtagtgtgtaattaaaatttgtaaaa 6454316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 13860113 - 13860257
Alignment:
Q  65 caagttcgattacaatgctaactattttattgattatttgaacc----ttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgt 160  Q
    ||||||||||| || || || ||||||||||  |||||||||||    |||||||||| ||||||||||||||  ||| ||||||||  || | ||||||    
T  13860113 caagttcgatttcagtgttagctattttattagttatttgaaccatacttaaattctttttgccttcagattcctatcaatctaattcgatgtcggttgt 13860212  T
Q  161 tctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||    
T  13860213 tctaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaa 13860257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 13858295 - 13858148
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaacc----ttaaattcttgttgccttcagattcggatcgatctaatttaattttggt 157  Q
    |||||||||||||| |||||||| |||||||| |  |||||||||||    |||||||||| ||||||||||||||  ||| ||||||||  || | |||    
T  13858295 ttgcaagttcgatttcaatgctagctattttactagttatttgaaccatacttaaattctttttgccttcagattcctatcaatctaattcgatgtcggt 13858196  T
Q  158 tgttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||| ||||||||||||| ||||| ||||||||| ||||||| |||||    
T  13858195 tgttttaaatatattaagacaagtagtgtgtaataaaagtttgtaaaa 13858148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 11664746 - 11664624
Alignment:
Q  77 caatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaagg 176  Q
    |||||||||||||||||||| ||||||||||||| ||||| | |||||||||||||   ||| ||||||||  || | ||||||| ||||||||||| |     
T  11664746 caatgctaactattttattggttatttgaaccttgaattccttttgccttcagatttctatcaatctaattcgatgtcggttgttttaaatatattagga 11664647  T
Q  177 caagtggtgtgtaatcaaagttt 199  Q
    ||||| || ||||||||||||||    
T  11664646 caagtagtatgtaatcaaagttt 11664624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 13858348 - 13858274
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||| | |||| ||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||    
T  13858348 aacatgttcactcgaagctcaagtggtatgtaaatgatgagtcataattcatgttgcaagttcgatttcaatgct 13858274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 6454512 - 6454438
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttcaatgct 371  Q
    |||||| | |||| ||| |||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||    
T  6454512 aacatgttcactcgaagttcaagtggtatgcaaatgaagagtcatagttcatattgtaagttcgatttcaatgct 6454438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 11664820 - 11664759
Alignment:
Q  297 aacatgcttactcaaagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagtt 358  Q
    |||||| | |||| |||||||||||||||||||||||||||||||||||||| | |||||||    
T  11664820 aacatgttaactcgaagctcaagtggtatgtaaatgaagagtcatagttcatgtagcaagtt 11664759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 90813 - 90749
Alignment:
Q  141 tctaatttaattttggttgttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||| ||| ||||||||| ||||||||||||| ||||| |||||||||||||| || |||||    
T  90813 tctaattcaatgttggttgttttaaatatattaagacaagtagtgtgtaatcaaaggttgtaaaa 90749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 13860071 - 13860126
Alignment:
Q  311 aagctcaagtggtatgtaaatgaagagtcatagttcattttgcaagttcaatttca 366  Q
    ||||||||||||||||||||||| |||||||| ||||| || ||||||| ||||||    
T  13860071 aagctcaagtggtatgtaaatgaggagtcataattcatgtttcaagttcgatttca 13860126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 6454518 - 6454478
Alignment:
Q  21 tttgtaaacatattcacttgaagctcaagtggtatgcaaat 61  Q
    ||||||||||| |||||| |||| |||||||||||||||||    
T  6454518 tttgtaaacatgttcactcgaagttcaagtggtatgcaaat 6454478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 13858354 - 13858314
Alignment:
Q  21 tttgtaaacatattcacttgaagctcaagtggtatgcaaat 61  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  13858354 tttgtaaacatgttcactcgaagctcaagtggtatgtaaat 13858314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 13860051 - 13860091
Alignment:
Q  21 tttgtaaacatattcacttgaagctcaagtggtatgcaaat 61  Q
    ||||||||||| |||| ||||||||||||||||||| ||||    
T  13860051 tttgtaaacatgttcatttgaagctcaagtggtatgtaaat 13860091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 35549791 - 35549724
Alignment:
Q  66 aagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattc 133  Q
    ||||||||||  ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  35549791 aagttcgattttaatgctacctattttattggttatttgaaccttaaattctttttgccttcagattc 35549724  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 14389770 - 14389898
Alignment:
Q  77 caatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgttctaaatatattaagg 176  Q
    ||||||||  |||||||||| ||||||| | |||||||| || |||||||| |||||  ||| ||| |||| ||| | | |||||||||||||||||||     
T  14389770 caatgctaggtattttattggttatttgtatcttaaattatttttgccttctgattcctatcaatcgaattcaatgtcgattgttctaaatatattaaga 14389869  T
Q  177 caagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||| ||||||||| ||| ||| |||||    
T  14389870 caagtagtgtgtaattaaaatttgtaaaa 14389898  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 29171487 - 29171422
Alignment:
Q  140 atctaatttaattttggttgttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||  || ||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||    
T  29171487 atctaattcgatgttggttgttttaaatatattaagacaagttgtgtgtaatcaaagtttgtaaaa 29171422  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 5813508 - 5813365
Alignment:
Q  62 ttgcaagttcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcggatcgatctaatttaattttggttgtt 161  Q
    |||||||||| |||  ||||||| ||||||||||| ||||||||| ||||||||||| || || ||| ||||  ||| ||||||||  |  |   |||||    
T  5813508 ttgcaagttcaattttaatgctatctattttattggttatttgaatcttaaattcttttttccctcaaattcctatcaatctaattcgaagtccattgtt 5813409  T
Q  162 ctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    |||||||||| |||  | || ||||||||| ||||||| |||||    
T  5813408 ctaaatatatcaagataggtagtgtgtaataaaagtttgtaaaa 5813365  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 14391636 - 14391684
Alignment:
Q  157 ttgttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||| |||||    
T  14391636 ttgttctaaatatattaagacaagtggtgtgtaattaaaatttgtaaaa 14391684  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 35549836 - 35549797
Alignment:
Q  306 actcaaagctcaagtggtatgtaaatgaagagtcatagtt 345  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  35549836 actcgaagctcaagtggtatgtaaataaagagtcatagtt 35549797  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 37672646 - 37672689
Alignment:
Q  311 aagctcaagtggtatgtaaatgaagagtcatagttcattttgcaa 355  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||    
T  37672646 aagctcaagtggtatgtaaatgagga-tcatagttcatgttgcaa 37672689  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 205
Target Start/End: Complemental strand, 35026232 - 35026096
Alignment:
Q  70 tcgattacaatgctaactattttattgattatttgaaccttaaattcttgttgccttcagattcgg-atcgatctaatttaattttggttgttctaaata 168  Q
    |||||| |||| ||||||||||||||| |||||| ||| |  ||||||| ||| |||||||||    ||| ||||||||  || | ||||||||||||||    
T  35026232 tcgatttcaatcctaactattttattggttatttaaacttcgaattctttttgtcttcagatttaatatcaatctaattcgatgtcggttgttctaaata 35026133  T
Q  169 tattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||| | ||||| ||||||||||||||||| |||||    
T  35026132 tattaggacaagtagtgtgtaatcaaagtttgtaaaa 35026096  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 7300713 - 7300648
Alignment:
Q  140 atctaatttaattttggttgttctaaatatattaaggcaagtggtgtgtaatcaaagtttctaaaa 205  Q
    ||||||||| || ||| ||||| |||||||||||||  |||| ||||||| ||||||||| |||||    
T  7300713 atctaatttgatgttgattgttttaaatatattaagataagtagtgtgtattcaaagtttgtaaaa 7300648  T

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