View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_19 (Length: 379)
Name: NF7802_low_19
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 42302460 - 42302107
Alignment:
| Q |
14 |
atgttgcaccccagcaggcaatctagatgttgtcgtgaaggcttataggaatcgaacacaacatatgcaagatctaacgaaggatcatagagctagtgag |
113 |
Q |
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| T |
42302460 |
atgttgcaccccagcaggcaatctagatgttgttgtgaaggcttataggaagcgaacacaacatatgcaagatctaacgaaggatcatagagctagtgag |
42302361 |
T |
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| Q |
114 |
gatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactaaatcaaatagtgaaatg |
213 |
Q |
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| T |
42302360 |
gatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactagatcaaatagtgaaatg |
42302261 |
T |
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| Q |
214 |
aatgtctatgtactagttgatctaattgttgtatttgtactggtttatctaaaattgtttgctttagagacagtgcttcattgtccttatagtcaaagat |
313 |
Q |
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| T |
42302260 |
aatgtctatgtactagttgatctaattgttgtatttgtactggttgatctaaaattgtttgctttagagacggtgcttcattgtccttatagtc-aagat |
42302162 |
T |
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| Q |
314 |
tagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatatt |
368 |
Q |
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| T |
42302161 |
tagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatatt |
42302107 |
T |
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