View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_20 (Length: 377)
Name: NF7802_low_20
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 136 - 360
Target Start/End: Original strand, 32326181 - 32326408
Alignment:
| Q |
136 |
ttgttgaggaatatttagagatgttttaactccccgcatgatcacccaatattggagatgctccaattcttcactgcatgatca---tccaatgttggag |
232 |
Q |
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| T |
32326181 |
ttgttgaggaatatttagagatgttttaactccccgcatgatcacccaatattagagatgctccaattctccactgcatgatcaatatccaatgttggag |
32326280 |
T |
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| Q |
233 |
atacttcaactcctagcaaattctcccatttatagtaagaatatagatggcaatactttccaattacttgagtgatatgcacttttgtctttgttcatgg |
332 |
Q |
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| T |
32326281 |
atacttcaactcctagcaaattctcccatttatagtaagaatatagatggcaatactttccaattacttgagtgatatgcacttttgtctttgttcatgg |
32326380 |
T |
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| Q |
333 |
tgatatcgtaattaaaatacaagttatc |
360 |
Q |
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| T |
32326381 |
tgatatcgtaattaaaatacaagttatc |
32326408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 32326044 - 32326130
Alignment:
| Q |
1 |
ggttcaaatcatagaagccttgaaacatctctaaataatcttctaatacattacgatcctttttgtatatgcggaaacgatttagtg |
87 |
Q |
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| T |
32326044 |
ggttcaaatcatagaagccttgaaacatctctaaataatcttctaatatattacgatcctttttgtatatgcggaaacgatttagtg |
32326130 |
T |
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